Hb_053582_010

Information

Type -
Description -
Location Contig53582: 432-1193
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053582_010 0.0 - - -
2 Hb_174005_010 0.1678931469 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
3 Hb_101151_030 0.2062471847 - - -
4 Hb_001377_440 0.217174676 - - -
5 Hb_000906_050 0.2262521492 - - -
6 Hb_086287_020 0.2326533615 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
7 Hb_056531_040 0.236165056 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
8 Hb_001969_050 0.2406912975 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
9 Hb_000116_080 0.241757986 - - PREDICTED: uncharacterized protein LOC104097358 [Nicotiana tomentosiformis]
10 Hb_000002_030 0.251562363 - - -
11 Hb_032531_040 0.253177293 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
12 Hb_001454_110 0.2532905943 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
13 Hb_001206_070 0.2533336434 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000510_070 0.2534923327 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Beta vulgaris subsp. vulgaris]
15 Hb_032531_050 0.2550394695 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
16 Hb_033883_050 0.2564023982 - - -
17 Hb_042026_010 0.2566806154 - - RNA binding protein, putative [Ricinus communis]
18 Hb_010172_060 0.2569581062 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
19 Hb_000805_300 0.2574717747 - - -
20 Hb_017134_020 0.2578502629 - - -

Gene co-expression network

sample Hb_053582_010 Hb_053582_010 Hb_174005_010 Hb_174005_010 Hb_053582_010--Hb_174005_010 Hb_101151_030 Hb_101151_030 Hb_053582_010--Hb_101151_030 Hb_001377_440 Hb_001377_440 Hb_053582_010--Hb_001377_440 Hb_000906_050 Hb_000906_050 Hb_053582_010--Hb_000906_050 Hb_086287_020 Hb_086287_020 Hb_053582_010--Hb_086287_020 Hb_056531_040 Hb_056531_040 Hb_053582_010--Hb_056531_040 Hb_000005_210 Hb_000005_210 Hb_174005_010--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_174005_010--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_174005_010--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_174005_010--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_174005_010--Hb_000081_170 Hb_000805_300 Hb_000805_300 Hb_101151_030--Hb_000805_300 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_000002_030 Hb_000002_030 Hb_101151_030--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_101151_030--Hb_001454_110 Hb_001235_060 Hb_001235_060 Hb_101151_030--Hb_001235_060 Hb_001377_440--Hb_000906_050 Hb_001723_050 Hb_001723_050 Hb_001377_440--Hb_001723_050 Hb_006995_020 Hb_006995_020 Hb_001377_440--Hb_006995_020 Hb_033883_050 Hb_033883_050 Hb_001377_440--Hb_033883_050 Hb_001014_200 Hb_001014_200 Hb_001377_440--Hb_001014_200 Hb_000906_050--Hb_033883_050 Hb_010172_060 Hb_010172_060 Hb_000906_050--Hb_010172_060 Hb_004947_070 Hb_004947_070 Hb_000906_050--Hb_004947_070 Hb_144552_010 Hb_144552_010 Hb_000906_050--Hb_144552_010 Hb_098842_010 Hb_098842_010 Hb_086287_020--Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_086287_020--Hb_010997_050 Hb_086287_020--Hb_056531_040 Hb_000059_090 Hb_000059_090 Hb_086287_020--Hb_000059_090 Hb_000004_140 Hb_000004_140 Hb_086287_020--Hb_000004_140 Hb_011537_120 Hb_011537_120 Hb_086287_020--Hb_011537_120 Hb_056531_040--Hb_000059_090 Hb_000115_270 Hb_000115_270 Hb_056531_040--Hb_000115_270 Hb_056531_040--Hb_000002_030 Hb_124567_010 Hb_124567_010 Hb_056531_040--Hb_124567_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06048 0 0 0 0.633456 50.6808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27164 0 1.02911 0.427471 2.14745

CAGE analysis