Hb_124567_010

Information

Type -
Description -
Location Contig124567: 1360-1596
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124567_010 0.0 - - -
2 Hb_004282_030 0.1813086865 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
3 Hb_003636_050 0.1963594412 - - PREDICTED: bark storage protein A-like [Populus euphratica]
4 Hb_010997_050 0.2241578437 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
5 Hb_001691_160 0.2245827512 - - conserved hypothetical protein [Ricinus communis]
6 Hb_056531_040 0.23538769 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
7 Hb_086287_020 0.2356325292 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
8 Hb_098842_010 0.2357409951 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
9 Hb_000059_090 0.2385755973 - - -
10 Hb_000115_270 0.2391700131 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
11 Hb_076583_010 0.2412313537 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
12 Hb_000004_140 0.2413834505 - - -
13 Hb_130775_010 0.2443792233 - - conserved hypothetical protein [Ricinus communis]
14 Hb_064951_010 0.2464691428 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
15 Hb_001668_030 0.2613310504 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012340_040 0.2627873339 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]
17 Hb_075642_010 0.2637138473 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
18 Hb_111834_010 0.263736715 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_004829_020 0.264193015 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_115578_010 0.2656737436 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]

Gene co-expression network

sample Hb_124567_010 Hb_124567_010 Hb_004282_030 Hb_004282_030 Hb_124567_010--Hb_004282_030 Hb_003636_050 Hb_003636_050 Hb_124567_010--Hb_003636_050 Hb_010997_050 Hb_010997_050 Hb_124567_010--Hb_010997_050 Hb_001691_160 Hb_001691_160 Hb_124567_010--Hb_001691_160 Hb_056531_040 Hb_056531_040 Hb_124567_010--Hb_056531_040 Hb_086287_020 Hb_086287_020 Hb_124567_010--Hb_086287_020 Hb_004282_030--Hb_010997_050 Hb_098842_010 Hb_098842_010 Hb_004282_030--Hb_098842_010 Hb_000004_140 Hb_000004_140 Hb_004282_030--Hb_000004_140 Hb_004829_020 Hb_004829_020 Hb_004282_030--Hb_004829_020 Hb_012340_040 Hb_012340_040 Hb_004282_030--Hb_012340_040 Hb_076583_010 Hb_076583_010 Hb_003636_050--Hb_076583_010 Hb_005542_020 Hb_005542_020 Hb_003636_050--Hb_005542_020 Hb_013727_010 Hb_013727_010 Hb_003636_050--Hb_013727_010 Hb_064951_010 Hb_064951_010 Hb_003636_050--Hb_064951_010 Hb_105480_010 Hb_105480_010 Hb_003636_050--Hb_105480_010 Hb_111332_010 Hb_111332_010 Hb_003636_050--Hb_111332_010 Hb_010997_050--Hb_098842_010 Hb_105484_010 Hb_105484_010 Hb_010997_050--Hb_105484_010 Hb_010997_050--Hb_000004_140 Hb_010997_050--Hb_076583_010 Hb_010997_050--Hb_064951_010 Hb_005933_010 Hb_005933_010 Hb_001691_160--Hb_005933_010 Hb_000002_030 Hb_000002_030 Hb_001691_160--Hb_000002_030 Hb_001235_060 Hb_001235_060 Hb_001691_160--Hb_001235_060 Hb_000115_270 Hb_000115_270 Hb_001691_160--Hb_000115_270 Hb_001385_080 Hb_001385_080 Hb_001691_160--Hb_001385_080 Hb_101151_030 Hb_101151_030 Hb_001691_160--Hb_101151_030 Hb_000059_090 Hb_000059_090 Hb_056531_040--Hb_000059_090 Hb_056531_040--Hb_000115_270 Hb_056531_040--Hb_086287_020 Hb_056531_040--Hb_000002_030 Hb_053582_010 Hb_053582_010 Hb_056531_040--Hb_053582_010 Hb_086287_020--Hb_098842_010 Hb_086287_020--Hb_010997_050 Hb_086287_020--Hb_000059_090 Hb_086287_020--Hb_000004_140 Hb_011537_120 Hb_011537_120 Hb_086287_020--Hb_011537_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92579 0 0 0 4.45804 23.3028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.746854 1.18936 0 1.1189 0

CAGE analysis