Hb_001691_160

Information

Type -
Description -
Location Contig1691: 231877-232291
Sequence    

Annotation

kegg
ID rcu:RCOM_0936650
description hypothetical protein
nr
ID XP_002519067.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZ98
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0936650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005933_010 0.1594527596 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
3 Hb_000002_030 0.1761653694 - - -
4 Hb_001235_060 0.1822513777 - - -
5 Hb_000115_270 0.1956178947 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
6 Hb_001385_080 0.2013853001 - - -
7 Hb_101151_030 0.204614877 - - -
8 Hb_000248_010 0.2050471781 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
9 Hb_003623_020 0.2169473812 - - -
10 Hb_122567_020 0.2182418108 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
11 Hb_000805_300 0.2218515923 - - -
12 Hb_000248_030 0.2228356904 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
13 Hb_124567_010 0.2245827512 - - -
14 Hb_088774_010 0.2312515307 - - -
15 Hb_003927_150 0.2330179237 - - -
16 Hb_001454_110 0.2367787162 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
17 Hb_000808_240 0.2383951807 - - -
18 Hb_000204_020 0.2389365191 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
19 Hb_059952_010 0.2400794877 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
20 Hb_011639_090 0.2415268381 - - PREDICTED: transcription factor bHLH75-like [Populus euphratica]

Gene co-expression network

sample Hb_001691_160 Hb_001691_160 Hb_005933_010 Hb_005933_010 Hb_001691_160--Hb_005933_010 Hb_000002_030 Hb_000002_030 Hb_001691_160--Hb_000002_030 Hb_001235_060 Hb_001235_060 Hb_001691_160--Hb_001235_060 Hb_000115_270 Hb_000115_270 Hb_001691_160--Hb_000115_270 Hb_001385_080 Hb_001385_080 Hb_001691_160--Hb_001385_080 Hb_101151_030 Hb_101151_030 Hb_001691_160--Hb_101151_030 Hb_122567_020 Hb_122567_020 Hb_005933_010--Hb_122567_020 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_059952_010 Hb_059952_010 Hb_005933_010--Hb_059952_010 Hb_032531_050 Hb_032531_050 Hb_000002_030--Hb_032531_050 Hb_000316_090 Hb_000316_090 Hb_000002_030--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_000002_030--Hb_034579_010 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_000002_030--Hb_101151_030 Hb_000002_030--Hb_001235_060 Hb_001235_060--Hb_000248_030 Hb_001235_060--Hb_000248_010 Hb_001235_060--Hb_122567_020 Hb_000805_300 Hb_000805_300 Hb_001235_060--Hb_000805_300 Hb_009265_020 Hb_009265_020 Hb_000115_270--Hb_009265_020 Hb_004282_030 Hb_004282_030 Hb_000115_270--Hb_004282_030 Hb_056531_040 Hb_056531_040 Hb_000115_270--Hb_056531_040 Hb_000059_090 Hb_000059_090 Hb_000115_270--Hb_000059_090 Hb_098842_010 Hb_098842_010 Hb_000115_270--Hb_098842_010 Hb_001385_080--Hb_122567_020 Hb_001385_080--Hb_005933_010 Hb_001385_080--Hb_059952_010 Hb_001385_080--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_001385_080--Hb_001454_110 Hb_001385_080--Hb_101151_030 Hb_101151_030--Hb_000805_300 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_101151_030--Hb_001454_110 Hb_101151_030--Hb_001235_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32989 0 0 1.28361 1.33994 19.2294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.324615 1.53242 0.373923 1.40497 0

CAGE analysis