Hb_122567_020

Information

Type -
Description -
Location Contig122567: 6969-7208
Sequence    

Annotation

kegg
ID cic:CICLE_v10009900mg
description hypothetical protein
nr
ID XP_006451006.1
description hypothetical protein CICLE_v10009900mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UP97
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009900mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122567_020 0.0 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
2 Hb_005933_010 0.1066502484 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
3 Hb_000805_300 0.1324449682 - - -
4 Hb_000617_170 0.1472916569 - - -
5 Hb_059952_010 0.1478638433 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
6 Hb_001385_080 0.1498491892 - - -
7 Hb_001235_060 0.1509662296 - - -
8 Hb_000248_030 0.1512647604 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
9 Hb_004958_040 0.1545817694 - - -
10 Hb_079978_010 0.1677401923 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
11 Hb_005318_020 0.1722976343 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
12 Hb_007447_020 0.1752838217 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
13 Hb_007083_050 0.180881398 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
14 Hb_169170_010 0.1871155555 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
15 Hb_001907_090 0.1902932644 - - -
16 Hb_079212_010 0.1942878005 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000204_020 0.1947297701 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
18 Hb_000084_130 0.196645958 - - -
19 Hb_001454_110 0.1975842328 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
20 Hb_002450_130 0.1985277922 - - hypothetical protein JCGZ_06565 [Jatropha curcas]

Gene co-expression network

sample Hb_122567_020 Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_122567_020--Hb_005933_010 Hb_000805_300 Hb_000805_300 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_059952_010 Hb_059952_010 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_005933_010--Hb_059952_010 Hb_001454_110 Hb_001454_110 Hb_000805_300--Hb_001454_110 Hb_101151_030 Hb_101151_030 Hb_000805_300--Hb_101151_030 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_000805_300--Hb_005933_010 Hb_000805_300--Hb_059952_010 Hb_000976_030 Hb_000976_030 Hb_000617_170--Hb_000976_030 Hb_000617_170--Hb_005933_010 Hb_134310_020 Hb_134310_020 Hb_000617_170--Hb_134310_020 Hb_000617_170--Hb_000248_010 Hb_169170_010 Hb_169170_010 Hb_000617_170--Hb_169170_010 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_059952_010--Hb_001454_110 Hb_059952_010--Hb_001385_080 Hb_001385_080--Hb_005933_010 Hb_001385_080--Hb_000805_300 Hb_001385_080--Hb_001454_110 Hb_001385_080--Hb_101151_030 Hb_001235_060--Hb_000248_030 Hb_001235_060--Hb_000248_010 Hb_001235_060--Hb_000805_300 Hb_000002_030 Hb_000002_030 Hb_001235_060--Hb_000002_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.37383 2.25024 1.37408 31.9597 9.156 166.072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.30254 4.5541 2.81415 5.35339 0.74971

CAGE analysis