Hb_005933_010

Information

Type -
Description -
Location Contig5933: 3842-4057
Sequence    

Annotation

kegg
ID tcc:TCM_005825
description LRR and NB-ARC domains-containing disease resistance protein, putative
nr
ID XP_011008281.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061DV65
description LRR and NB-ARC domains-containing disease resistance protein, putative OS=Theobroma cacao GN=TCM_005825 PE=4 SV=1
Gene Ontology
ID GO:0043167
description disease resistance protein at3g14460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50319: 3611-4144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005933_010 0.0 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
2 Hb_122567_020 0.1066502484 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
3 Hb_000248_030 0.1347181018 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
4 Hb_001235_060 0.1350763753 - - -
5 Hb_000248_010 0.1511802588 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
6 Hb_001691_160 0.1594527596 - - conserved hypothetical protein [Ricinus communis]
7 Hb_059952_010 0.1600580217 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
8 Hb_000805_300 0.1607748989 - - -
9 Hb_001385_080 0.1613796237 - - -
10 Hb_000617_170 0.1622913935 - - -
11 Hb_034579_010 0.1707897168 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
12 Hb_000204_020 0.1718559915 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
13 Hb_032531_060 0.1753667364 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
14 Hb_000002_030 0.1760612036 - - -
15 Hb_169170_010 0.1815047941 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
16 Hb_088774_010 0.1841486967 - - -
17 Hb_002960_050 0.1854804132 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
18 Hb_007447_020 0.1857851171 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
19 Hb_004958_040 0.1896560154 - - -
20 Hb_101151_030 0.1947329603 - - -

Gene co-expression network

sample Hb_005933_010 Hb_005933_010 Hb_122567_020 Hb_122567_020 Hb_005933_010--Hb_122567_020 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_001235_060 Hb_001235_060 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_059952_010 Hb_059952_010 Hb_005933_010--Hb_059952_010 Hb_000805_300 Hb_000805_300 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_122567_020--Hb_001235_060 Hb_000248_030--Hb_000248_010 Hb_000248_030--Hb_001235_060 Hb_000248_030--Hb_122567_020 Hb_073559_010 Hb_073559_010 Hb_000248_030--Hb_073559_010 Hb_002960_050 Hb_002960_050 Hb_000248_030--Hb_002960_050 Hb_001235_060--Hb_000248_010 Hb_001235_060--Hb_000805_300 Hb_000002_030 Hb_000002_030 Hb_001235_060--Hb_000002_030 Hb_000248_010--Hb_002960_050 Hb_000248_010--Hb_073559_010 Hb_088065_010 Hb_088065_010 Hb_000248_010--Hb_088065_010 Hb_001691_160--Hb_000002_030 Hb_001691_160--Hb_001235_060 Hb_000115_270 Hb_000115_270 Hb_001691_160--Hb_000115_270 Hb_001691_160--Hb_001385_080 Hb_101151_030 Hb_101151_030 Hb_001691_160--Hb_101151_030 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_059952_010--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_059952_010--Hb_001454_110 Hb_059952_010--Hb_001385_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7208 5.21196 4.26259 67.009 41.7007 533.948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4793 36.3415 17.3754 16.2508 3.0339

CAGE analysis