Hb_004958_040

Information

Type -
Description -
Location Contig4958: 51439-51976
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004958_040 0.0 - - -
2 Hb_059952_010 0.1505391543 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
3 Hb_122567_020 0.1545817694 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
4 Hb_001907_090 0.162008491 - - -
5 Hb_005933_010 0.1896560154 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
6 Hb_000617_170 0.1931443871 - - -
7 Hb_000805_300 0.1997534138 - - -
8 Hb_000684_480 0.2092552136 transcription factor TF Family: Orphans -
9 Hb_001235_060 0.2119831728 - - -
10 Hb_000084_130 0.2158202172 - - -
11 Hb_001385_080 0.2183159841 - - -
12 Hb_006995_010 0.2280216605 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
13 Hb_001579_040 0.2285337174 - - -
14 Hb_000291_130 0.2319550912 - - -
15 Hb_000066_180 0.233954187 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
16 Hb_002450_130 0.2346999054 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
17 Hb_007083_050 0.2347108233 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
18 Hb_000204_020 0.2362097022 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
19 Hb_001231_070 0.2403825664 - - -
20 Hb_000248_030 0.2447913012 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]

Gene co-expression network

sample Hb_004958_040 Hb_004958_040 Hb_059952_010 Hb_059952_010 Hb_004958_040--Hb_059952_010 Hb_122567_020 Hb_122567_020 Hb_004958_040--Hb_122567_020 Hb_001907_090 Hb_001907_090 Hb_004958_040--Hb_001907_090 Hb_005933_010 Hb_005933_010 Hb_004958_040--Hb_005933_010 Hb_000617_170 Hb_000617_170 Hb_004958_040--Hb_000617_170 Hb_000805_300 Hb_000805_300 Hb_004958_040--Hb_000805_300 Hb_059952_010--Hb_122567_020 Hb_059952_010--Hb_005933_010 Hb_059952_010--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_059952_010--Hb_001454_110 Hb_001385_080 Hb_001385_080 Hb_059952_010--Hb_001385_080 Hb_122567_020--Hb_005933_010 Hb_122567_020--Hb_000805_300 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_000684_480 Hb_000684_480 Hb_001907_090--Hb_000684_480 Hb_001907_090--Hb_122567_020 Hb_000066_180 Hb_000066_180 Hb_001907_090--Hb_000066_180 Hb_001907_090--Hb_001385_080 Hb_000084_130 Hb_000084_130 Hb_001907_090--Hb_000084_130 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_000976_030 Hb_000976_030 Hb_000617_170--Hb_000976_030 Hb_000617_170--Hb_005933_010 Hb_134310_020 Hb_134310_020 Hb_000617_170--Hb_134310_020 Hb_000617_170--Hb_000248_010 Hb_169170_010 Hb_169170_010 Hb_000617_170--Hb_169170_010 Hb_000805_300--Hb_001454_110 Hb_101151_030 Hb_101151_030 Hb_000805_300--Hb_101151_030 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_000805_300--Hb_005933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.535177 1.56774 0 5.85552 1.62413 26.5006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10566 1.6903 0 0.396361 0

CAGE analysis