Hb_000084_130

Information

Type -
Description -
Location Contig84: 112534-112821
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60036: 111330-111634 , PASA_asmbl_60037: 111703-111924 , PASA_asmbl_60038: 111933-112614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_130 0.0 - - -
2 Hb_008096_020 0.1487396279 - - -
3 Hb_005318_020 0.1657379849 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
4 Hb_003656_150 0.1717224113 - - -
5 Hb_007083_050 0.1748326003 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
6 Hb_006995_010 0.1780961182 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
7 Hb_177103_010 0.1795753602 - - PREDICTED: histone H2AX [Elaeis guineensis]
8 Hb_031866_050 0.1797958826 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
9 Hb_169170_010 0.1814460193 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
10 Hb_003029_100 0.1843527024 - - -
11 Hb_007188_030 0.1877805265 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
12 Hb_007447_020 0.1910945798 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
13 Hb_003030_040 0.1957645851 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
14 Hb_122567_020 0.196645958 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
15 Hb_000683_090 0.2006852996 - - stress enhanced protein [Medicago truncatula]
16 Hb_021943_070 0.2009262017 - - -
17 Hb_007083_020 0.2031097322 - - hypothetical protein F775_15403 [Aegilops tauschii]
18 Hb_001385_080 0.2040515016 - - -
19 Hb_046120_010 0.206775519 - - -
20 Hb_079978_010 0.2072457093 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000084_130 Hb_000084_130 Hb_008096_020 Hb_008096_020 Hb_000084_130--Hb_008096_020 Hb_005318_020 Hb_005318_020 Hb_000084_130--Hb_005318_020 Hb_003656_150 Hb_003656_150 Hb_000084_130--Hb_003656_150 Hb_007083_050 Hb_007083_050 Hb_000084_130--Hb_007083_050 Hb_006995_010 Hb_006995_010 Hb_000084_130--Hb_006995_010 Hb_177103_010 Hb_177103_010 Hb_000084_130--Hb_177103_010 Hb_021943_070 Hb_021943_070 Hb_008096_020--Hb_021943_070 Hb_002450_130 Hb_002450_130 Hb_008096_020--Hb_002450_130 Hb_002972_060 Hb_002972_060 Hb_008096_020--Hb_002972_060 Hb_008096_020--Hb_003656_150 Hb_008096_020--Hb_006995_010 Hb_079978_010 Hb_079978_010 Hb_005318_020--Hb_079978_010 Hb_005318_020--Hb_007083_050 Hb_007447_020 Hb_007447_020 Hb_005318_020--Hb_007447_020 Hb_000683_090 Hb_000683_090 Hb_005318_020--Hb_000683_090 Hb_169170_010 Hb_169170_010 Hb_005318_020--Hb_169170_010 Hb_003656_150--Hb_006995_010 Hb_007188_030 Hb_007188_030 Hb_003656_150--Hb_007188_030 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_006198_090 Hb_006198_090 Hb_003656_150--Hb_006198_090 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040 Hb_007083_050--Hb_079978_010 Hb_007083_050--Hb_169170_010 Hb_007083_050--Hb_177103_010 Hb_122567_020 Hb_122567_020 Hb_007083_050--Hb_122567_020 Hb_000289_080 Hb_000289_080 Hb_006995_010--Hb_000289_080 Hb_006995_010--Hb_003029_100 Hb_006995_010--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_006995_010--Hb_000086_190 Hb_006995_010--Hb_006198_090 Hb_177103_010--Hb_169170_010 Hb_177103_010--Hb_007188_030 Hb_177103_010--Hb_006198_090 Hb_177103_010--Hb_003656_150 Hb_005679_070 Hb_005679_070 Hb_177103_010--Hb_005679_070 Hb_068014_010 Hb_068014_010 Hb_177103_010--Hb_068014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02045 0.648098 0.574445 18.5109 2.13119 43.45
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03016 4.07044 0 3.05704 1.96546

CAGE analysis