Hb_021943_070

Information

Type -
Description -
Location Contig21943: 89180-91618
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22588: 90696-98326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021943_070 0.0 - - -
2 Hb_008096_020 0.134448206 - - -
3 Hb_002972_060 0.1764981558 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
4 Hb_103093_010 0.1766951469 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
5 Hb_001089_080 0.1792096011 - - hypothetical protein glysoja_044047 [Glycine soja]
6 Hb_000084_130 0.2009262017 - - -
7 Hb_002732_020 0.2013493093 - - -
8 Hb_002450_130 0.2015524833 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
9 Hb_005318_010 0.2016725785 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
10 Hb_007188_030 0.2027675008 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
11 Hb_007083_050 0.2037698315 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
12 Hb_003656_150 0.2064938158 - - -
13 Hb_094132_010 0.2078110365 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
14 Hb_000193_030 0.2128526154 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
15 Hb_002079_020 0.2136826394 - - -
16 Hb_003030_040 0.2140420216 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
17 Hb_005318_020 0.2142059116 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
18 Hb_079978_010 0.2215151682 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
19 Hb_006995_010 0.2252129026 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
20 Hb_075745_010 0.229093243 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]

Gene co-expression network

sample Hb_021943_070 Hb_021943_070 Hb_008096_020 Hb_008096_020 Hb_021943_070--Hb_008096_020 Hb_002972_060 Hb_002972_060 Hb_021943_070--Hb_002972_060 Hb_103093_010 Hb_103093_010 Hb_021943_070--Hb_103093_010 Hb_001089_080 Hb_001089_080 Hb_021943_070--Hb_001089_080 Hb_000084_130 Hb_000084_130 Hb_021943_070--Hb_000084_130 Hb_002732_020 Hb_002732_020 Hb_021943_070--Hb_002732_020 Hb_002450_130 Hb_002450_130 Hb_008096_020--Hb_002450_130 Hb_008096_020--Hb_002972_060 Hb_008096_020--Hb_000084_130 Hb_003656_150 Hb_003656_150 Hb_008096_020--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_008096_020--Hb_006995_010 Hb_009119_010 Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_005723_070 Hb_005723_070 Hb_002972_060--Hb_005723_070 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_002972_060--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_002972_060--Hb_000876_010 Hb_094132_010 Hb_094132_010 Hb_103093_010--Hb_094132_010 Hb_000193_030 Hb_000193_030 Hb_103093_010--Hb_000193_030 Hb_000340_330 Hb_000340_330 Hb_103093_010--Hb_000340_330 Hb_000130_170 Hb_000130_170 Hb_103093_010--Hb_000130_170 Hb_103093_010--Hb_005723_070 Hb_005107_020 Hb_005107_020 Hb_001089_080--Hb_005107_020 Hb_001579_260 Hb_001579_260 Hb_001089_080--Hb_001579_260 Hb_022891_010 Hb_022891_010 Hb_001089_080--Hb_022891_010 Hb_130367_010 Hb_130367_010 Hb_001089_080--Hb_130367_010 Hb_001089_080--Hb_008096_020 Hb_005318_020 Hb_005318_020 Hb_000084_130--Hb_005318_020 Hb_000084_130--Hb_003656_150 Hb_007083_050 Hb_007083_050 Hb_000084_130--Hb_007083_050 Hb_000084_130--Hb_006995_010 Hb_177103_010 Hb_177103_010 Hb_000084_130--Hb_177103_010 Hb_003030_040 Hb_003030_040 Hb_002732_020--Hb_003030_040 Hb_002732_020--Hb_003656_150 Hb_007188_030 Hb_007188_030 Hb_002732_020--Hb_007188_030 Hb_031866_050 Hb_031866_050 Hb_002732_020--Hb_031866_050 Hb_002732_020--Hb_005107_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.627696 0 17.4612 0 30.3646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.997055 1.59854 0.922402 1.87658 0.969039

CAGE analysis