Hb_005107_020

Information

Type -
Description -
Location Contig5107: 40612-42497
Sequence    

Annotation

kegg
ID egr:104449649
description ras-related protein RABC1
nr
ID KDP43080.1
description hypothetical protein JCGZ_25266 [Jatropha curcas]
swissprot
ID O23657
description Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=1 SV=1
trembl
ID A0A067LEY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25266 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005107_020 0.0 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
2 Hb_000034_090 0.1352657523 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
3 Hb_006162_020 0.1368952385 - - -
4 Hb_006794_010 0.1394133987 - - elicitor-responsive protein [Hevea brasiliensis]
5 Hb_012675_080 0.1473870782 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
6 Hb_011200_010 0.1497189161 - - -
7 Hb_003030_040 0.1510640313 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
8 Hb_162090_010 0.1539241311 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
9 Hb_183522_010 0.1615964908 - - Far upstream element-binding protein, putative [Ricinus communis]
10 Hb_003656_150 0.1686306812 - - -
11 Hb_001579_260 0.1728363794 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
12 Hb_002079_040 0.1730196389 - - hypothetical protein VITISV_018542 [Vitis vinifera]
13 Hb_022614_010 0.1737585772 - - -
14 Hb_000953_120 0.1750945625 - - -
15 Hb_000789_150 0.175506423 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
16 Hb_008096_020 0.1777993367 - - -
17 Hb_013394_100 0.1786229399 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
18 Hb_108227_010 0.1791782344 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
19 Hb_017014_020 0.1856879087 - - -
20 Hb_011037_020 0.1885230901 - - unknown [Picea sitchensis]

Gene co-expression network

sample Hb_005107_020 Hb_005107_020 Hb_000034_090 Hb_000034_090 Hb_005107_020--Hb_000034_090 Hb_006162_020 Hb_006162_020 Hb_005107_020--Hb_006162_020 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_012675_080 Hb_012675_080 Hb_005107_020--Hb_012675_080 Hb_011200_010 Hb_011200_010 Hb_005107_020--Hb_011200_010 Hb_003030_040 Hb_003030_040 Hb_005107_020--Hb_003030_040 Hb_000034_090--Hb_006162_020 Hb_099298_010 Hb_099298_010 Hb_000034_090--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_000034_090--Hb_002079_040 Hb_041601_010 Hb_041601_010 Hb_000034_090--Hb_041601_010 Hb_000034_090--Hb_012675_080 Hb_162090_010 Hb_162090_010 Hb_006162_020--Hb_162090_010 Hb_022614_010 Hb_022614_010 Hb_006162_020--Hb_022614_010 Hb_017014_020 Hb_017014_020 Hb_006162_020--Hb_017014_020 Hb_183522_010 Hb_183522_010 Hb_006162_020--Hb_183522_010 Hb_006794_010--Hb_011200_010 Hb_000025_080 Hb_000025_080 Hb_006794_010--Hb_000025_080 Hb_009119_010 Hb_009119_010 Hb_006794_010--Hb_009119_010 Hb_006794_010--Hb_006162_020 Hb_006794_010--Hb_022614_010 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_011200_010--Hb_022614_010 Hb_013394_100 Hb_013394_100 Hb_011200_010--Hb_013394_100 Hb_011200_010--Hb_012675_080 Hb_011200_010--Hb_006162_020 Hb_002815_050 Hb_002815_050 Hb_003030_040--Hb_002815_050 Hb_031866_050 Hb_031866_050 Hb_003030_040--Hb_031866_050 Hb_007188_030 Hb_007188_030 Hb_003030_040--Hb_007188_030 Hb_003030_040--Hb_003656_150 Hb_005679_070 Hb_005679_070 Hb_003030_040--Hb_005679_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8049 19.7574 22.7791 897.562 34.1245 721.099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.8082 88.4968 73.6079 51.9936 36.3324

CAGE analysis