Hb_000025_080

Information

Type -
Description -
Location Contig25: 94907-95306
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26044: 94950-98649
cDNA
(Sanger)
(ID:Location)		 006_F01.ab1: 94946-96782 , 010_M15.ab1: 94957-96782 , 012_B08.ab1: 94946-96762 , 016_A17.ab1: 94946-96756 , 017_K19.ab1: 94939-96676 , 018_H04.ab1: 94950-96734 , 020_C17.ab1: 94950-97707 , 030_N13.ab1: 94950-96781 , 031_M13.ab1: 94957-96763 , 034_F19.ab1: 94954-97715 , 039_O21.ab1: 94954-96078 , 047_A12.ab1: 94950-96775

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_080 0.0 - - -
2 Hb_000953_120 0.1563776934 - - -
3 Hb_009119_010 0.1594618141 - - -
4 Hb_162090_010 0.1720519176 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
5 Hb_017014_020 0.176090411 - - -
6 Hb_002016_030 0.1762280363 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006794_010 0.1783138306 - - elicitor-responsive protein [Hevea brasiliensis]
8 Hb_006162_020 0.1832573309 - - -
9 Hb_041601_010 0.1845881387 - - -
10 Hb_022614_010 0.1991951923 - - -
11 Hb_005107_020 0.213276351 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
12 Hb_011200_010 0.213668812 - - -
13 Hb_000270_540 0.2202834766 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
14 Hb_005368_030 0.2226763789 - - -
15 Hb_005263_010 0.2247365232 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
16 Hb_010367_020 0.2271517481 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
17 Hb_005723_070 0.2305280092 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
18 Hb_002972_060 0.2346427298 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
19 Hb_182507_010 0.2363468885 - - -
20 Hb_001660_140 0.2375190162 - - -

Gene co-expression network

sample Hb_000025_080 Hb_000025_080 Hb_000953_120 Hb_000953_120 Hb_000025_080--Hb_000953_120 Hb_009119_010 Hb_009119_010 Hb_000025_080--Hb_009119_010 Hb_162090_010 Hb_162090_010 Hb_000025_080--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000025_080--Hb_017014_020 Hb_002016_030 Hb_002016_030 Hb_000025_080--Hb_002016_030 Hb_006794_010 Hb_006794_010 Hb_000025_080--Hb_006794_010 Hb_041601_010 Hb_041601_010 Hb_000953_120--Hb_041601_010 Hb_000953_120--Hb_009119_010 Hb_000953_120--Hb_002016_030 Hb_000953_120--Hb_162090_010 Hb_000034_090 Hb_000034_090 Hb_000953_120--Hb_000034_090 Hb_002972_060 Hb_002972_060 Hb_009119_010--Hb_002972_060 Hb_009119_010--Hb_002016_030 Hb_000270_540 Hb_000270_540 Hb_009119_010--Hb_000270_540 Hb_013040_010 Hb_013040_010 Hb_009119_010--Hb_013040_010 Hb_022614_010 Hb_022614_010 Hb_162090_010--Hb_022614_010 Hb_006162_020 Hb_006162_020 Hb_162090_010--Hb_006162_020 Hb_162090_010--Hb_017014_020 Hb_005107_020 Hb_005107_020 Hb_162090_010--Hb_005107_020 Hb_162090_010--Hb_041601_010 Hb_017014_020--Hb_022614_010 Hb_017014_020--Hb_006162_020 Hb_009083_030 Hb_009083_030 Hb_017014_020--Hb_009083_030 Hb_188313_010 Hb_188313_010 Hb_017014_020--Hb_188313_010 Hb_002016_030--Hb_041601_010 Hb_011200_010 Hb_011200_010 Hb_002016_030--Hb_011200_010 Hb_010367_020 Hb_010367_020 Hb_002016_030--Hb_010367_020 Hb_006794_010--Hb_011200_010 Hb_006794_010--Hb_005107_020 Hb_006794_010--Hb_009119_010 Hb_006794_010--Hb_006162_020 Hb_006794_010--Hb_022614_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.922 0.528056 0.637685 82.0021 1.16686 33.1549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86412 0.733125 1.08274 1.89347 1.18024

CAGE analysis