Hb_000270_540

Information

Type -
Description -
Location Contig270: 427740-428043
Sequence    

Annotation

kegg
ID rcu:RCOM_1512580
description Methyltransferase gidB, putative
nr
ID KDP31151.1
description hypothetical protein JCGZ_11527 [Jatropha curcas]
swissprot
ID B2FNF9
description Ribosomal RNA small subunit methyltransferase G OS=Stenotrophomonas maltophilia (strain K279a) GN=rsmG PE=3 SV=1
trembl
ID A0A067K4K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11527 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_540 0.0 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
2 Hb_001660_140 0.1049768514 - - -
3 Hb_182507_010 0.1049978459 - - -
4 Hb_013040_010 0.107423836 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
5 Hb_005368_030 0.1213545405 - - -
6 Hb_004907_030 0.1332339226 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
7 Hb_033312_110 0.1493227924 - - -
8 Hb_005263_010 0.1656006094 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
9 Hb_009119_010 0.16893657 - - -
10 Hb_000300_140 0.1862512801 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
11 Hb_068804_060 0.1909872887 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
12 Hb_007290_020 0.1911088604 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
13 Hb_007356_010 0.1955033671 - - CTV.19 [Citrus trifoliata]
14 Hb_005723_070 0.1966487555 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
15 Hb_163132_010 0.1990137125 - - -
16 Hb_000953_120 0.2006281204 - - -
17 Hb_009803_010 0.2139299092 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
18 Hb_002972_060 0.2184982902 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
19 Hb_000025_080 0.2202834766 - - -
20 Hb_000010_040 0.2259517478 - - PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_000270_540 Hb_000270_540 Hb_001660_140 Hb_001660_140 Hb_000270_540--Hb_001660_140 Hb_182507_010 Hb_182507_010 Hb_000270_540--Hb_182507_010 Hb_013040_010 Hb_013040_010 Hb_000270_540--Hb_013040_010 Hb_005368_030 Hb_005368_030 Hb_000270_540--Hb_005368_030 Hb_004907_030 Hb_004907_030 Hb_000270_540--Hb_004907_030 Hb_033312_110 Hb_033312_110 Hb_000270_540--Hb_033312_110 Hb_001660_140--Hb_182507_010 Hb_001660_140--Hb_013040_010 Hb_001660_140--Hb_005368_030 Hb_001660_140--Hb_004907_030 Hb_001660_140--Hb_033312_110 Hb_182507_010--Hb_013040_010 Hb_182507_010--Hb_005368_030 Hb_182507_010--Hb_004907_030 Hb_182507_010--Hb_033312_110 Hb_013040_010--Hb_004907_030 Hb_013040_010--Hb_033312_110 Hb_013040_010--Hb_005368_030 Hb_005263_010 Hb_005263_010 Hb_005368_030--Hb_005263_010 Hb_005368_030--Hb_004907_030 Hb_004907_030--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_004907_030--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_004907_030--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_004907_030--Hb_007290_020 Hb_033312_110--Hb_000300_140 Hb_033312_110--Hb_068804_060 Hb_033312_110--Hb_007290_020 Hb_007356_010 Hb_007356_010 Hb_033312_110--Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_033312_110--Hb_163132_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 12.2169 0 7.66887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.444499 0

CAGE analysis