Hb_004907_030

Information

Type -
Description -
Location Contig4907: 89135-89749
Sequence    

Annotation

kegg
ID pop:POPTR_0012s032802
description hypothetical protein
nr
ID XP_006376686.1
description hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID U5FTE3
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s032802g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004907_030 0.0 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
2 Hb_033312_110 0.0243602248 - - -
3 Hb_013040_010 0.0596038204 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
4 Hb_000300_140 0.0725255104 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
5 Hb_068804_060 0.0782957851 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
6 Hb_007290_020 0.0784430894 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
7 Hb_001660_140 0.0814941706 - - -
8 Hb_007356_010 0.0837421992 - - CTV.19 [Citrus trifoliata]
9 Hb_182507_010 0.0848494163 - - -
10 Hb_163132_010 0.08794146 - - -
11 Hb_000270_540 0.1332339226 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
12 Hb_005368_030 0.1434620777 - - -
13 Hb_005723_070 0.1674417809 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
14 Hb_009119_010 0.1875010711 - - -
15 Hb_002972_060 0.1960505512 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_082195_010 0.2013379886 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
17 Hb_081815_010 0.2085578655 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
18 Hb_005263_010 0.2103850371 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
19 Hb_000876_010 0.2116094429 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
20 Hb_094132_010 0.2145605443 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]

Gene co-expression network

sample Hb_004907_030 Hb_004907_030 Hb_033312_110 Hb_033312_110 Hb_004907_030--Hb_033312_110 Hb_013040_010 Hb_013040_010 Hb_004907_030--Hb_013040_010 Hb_000300_140 Hb_000300_140 Hb_004907_030--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_004907_030--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_004907_030--Hb_007290_020 Hb_001660_140 Hb_001660_140 Hb_004907_030--Hb_001660_140 Hb_033312_110--Hb_000300_140 Hb_033312_110--Hb_068804_060 Hb_033312_110--Hb_007290_020 Hb_007356_010 Hb_007356_010 Hb_033312_110--Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_033312_110--Hb_163132_010 Hb_013040_010--Hb_001660_140 Hb_182507_010 Hb_182507_010 Hb_013040_010--Hb_182507_010 Hb_013040_010--Hb_033312_110 Hb_005368_030 Hb_005368_030 Hb_013040_010--Hb_005368_030 Hb_000270_540 Hb_000270_540 Hb_013040_010--Hb_000270_540 Hb_000300_140--Hb_068804_060 Hb_000300_140--Hb_007290_020 Hb_000300_140--Hb_007356_010 Hb_000300_140--Hb_163132_010 Hb_068804_060--Hb_007290_020 Hb_068804_060--Hb_007356_010 Hb_068804_060--Hb_163132_010 Hb_007290_020--Hb_007356_010 Hb_007290_020--Hb_163132_010 Hb_001660_140--Hb_182507_010 Hb_001660_140--Hb_005368_030 Hb_001660_140--Hb_000270_540 Hb_001660_140--Hb_033312_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0401821 0 0.0373682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis