Hb_007290_020

Information

Type -
Description -
Location Contig7290: 49666-53236
Sequence    

Annotation

kegg
ID rcu:RCOM_0331390
description Xylem serine proteinase 1 precursor, putative (EC:1.3.1.74)
nr
ID XP_012066464.1
description PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
swissprot
ID Q9LLL8
description Subtilisin-like protease SBT4.14 OS=Arabidopsis thaliana GN=SBT4.14 PE=2 SV=1
trembl
ID B9T5M7
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_0331390 PE=3 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007290_020 0.0 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
2 Hb_068804_060 0.0001476233 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
3 Hb_007356_010 0.0053114054 - - CTV.19 [Citrus trifoliata]
4 Hb_000300_140 0.0059294305 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
5 Hb_163132_010 0.0095215461 - - -
6 Hb_033312_110 0.0541188506 - - -
7 Hb_004907_030 0.0784430894 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
8 Hb_013040_010 0.137823311 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
9 Hb_000671_040 0.1406808625 - - -
10 Hb_001660_140 0.159582511 - - -
11 Hb_182507_010 0.162915273 - - -
12 Hb_005723_070 0.1668159381 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
13 Hb_094132_010 0.1699895092 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
14 Hb_000193_030 0.1820732093 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
15 Hb_081815_010 0.1868242467 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
16 Hb_082195_010 0.1890864629 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
17 Hb_002972_060 0.1904751723 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_000270_540 0.1911088604 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
19 Hb_000876_010 0.2080680203 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
20 Hb_002079_020 0.2099829166 - - -

Gene co-expression network

sample Hb_007290_020 Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_007290_020--Hb_068804_060 Hb_007356_010 Hb_007356_010 Hb_007290_020--Hb_007356_010 Hb_000300_140 Hb_000300_140 Hb_007290_020--Hb_000300_140 Hb_163132_010 Hb_163132_010 Hb_007290_020--Hb_163132_010 Hb_033312_110 Hb_033312_110 Hb_007290_020--Hb_033312_110 Hb_004907_030 Hb_004907_030 Hb_007290_020--Hb_004907_030 Hb_068804_060--Hb_007356_010 Hb_068804_060--Hb_000300_140 Hb_068804_060--Hb_163132_010 Hb_068804_060--Hb_033312_110 Hb_068804_060--Hb_004907_030 Hb_007356_010--Hb_163132_010 Hb_007356_010--Hb_000300_140 Hb_007356_010--Hb_033312_110 Hb_007356_010--Hb_004907_030 Hb_000300_140--Hb_163132_010 Hb_000300_140--Hb_033312_110 Hb_000300_140--Hb_004907_030 Hb_163132_010--Hb_033312_110 Hb_163132_010--Hb_004907_030 Hb_033312_110--Hb_004907_030 Hb_013040_010 Hb_013040_010 Hb_004907_030--Hb_013040_010 Hb_001660_140 Hb_001660_140 Hb_004907_030--Hb_001660_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0065126 0 0.00877543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis