Hb_033312_110

Information

Type -
Description -
Location Contig33312: 97383-104965
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34968: 95582-97561
cDNA
(Sanger)
(ID:Location)		 038_J24.ab1: 95982-97356 , 043_L21.ab1: 95582-97013

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_110 0.0 - - -
2 Hb_004907_030 0.0243602248 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
3 Hb_000300_140 0.0481948913 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
4 Hb_068804_060 0.0539713801 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
5 Hb_007290_020 0.0541188506 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
6 Hb_007356_010 0.0594241906 - - CTV.19 [Citrus trifoliata]
7 Hb_163132_010 0.0636287372 - - -
8 Hb_013040_010 0.0839214642 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
9 Hb_001660_140 0.1057806412 - - -
10 Hb_182507_010 0.1091303493 - - -
11 Hb_000270_540 0.1493227924 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
12 Hb_005723_070 0.1633663839 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
13 Hb_005368_030 0.1676122915 - - -
14 Hb_002972_060 0.191041331 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
15 Hb_000671_040 0.1942374721 - - -
16 Hb_082195_010 0.1943813488 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
17 Hb_009119_010 0.1967193882 - - -
18 Hb_094132_010 0.1986328251 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
19 Hb_081815_010 0.1989074927 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
20 Hb_000193_030 0.2047238843 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]

Gene co-expression network

sample Hb_033312_110 Hb_033312_110 Hb_004907_030 Hb_004907_030 Hb_033312_110--Hb_004907_030 Hb_000300_140 Hb_000300_140 Hb_033312_110--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_033312_110--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_033312_110--Hb_007290_020 Hb_007356_010 Hb_007356_010 Hb_033312_110--Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_033312_110--Hb_163132_010 Hb_013040_010 Hb_013040_010 Hb_004907_030--Hb_013040_010 Hb_004907_030--Hb_000300_140 Hb_004907_030--Hb_068804_060 Hb_004907_030--Hb_007290_020 Hb_001660_140 Hb_001660_140 Hb_004907_030--Hb_001660_140 Hb_000300_140--Hb_068804_060 Hb_000300_140--Hb_007290_020 Hb_000300_140--Hb_007356_010 Hb_000300_140--Hb_163132_010 Hb_068804_060--Hb_007290_020 Hb_068804_060--Hb_007356_010 Hb_068804_060--Hb_163132_010 Hb_007290_020--Hb_007356_010 Hb_007290_020--Hb_163132_010 Hb_007356_010--Hb_163132_010 Hb_007356_010--Hb_004907_030 Hb_163132_010--Hb_004907_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 19.9585 0 20.8178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis