Hb_013040_010

Information

Type -
Description -
Location Contig13040: 12588-16804
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09690g
description POPTRDRAFT_1087269; hypothetical protein
nr
ID XP_002313154.2
description hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
swissprot
ID Q8L7W8
description Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=FUC95A PE=1 SV=1
trembl
ID B9HS76
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09690g PE=4 SV=2
Gene Ontology
ID GO:0004560
description alpha-l-fucosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013040_010 0.0 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
2 Hb_001660_140 0.0219288904 - - -
3 Hb_182507_010 0.0252919487 - - -
4 Hb_004907_030 0.0596038204 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
5 Hb_033312_110 0.0839214642 - - -
6 Hb_005368_030 0.0841272551 - - -
7 Hb_000270_540 0.107423836 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
8 Hb_000300_140 0.1319313549 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
9 Hb_068804_060 0.137676662 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
10 Hb_007290_020 0.137823311 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
11 Hb_007356_010 0.1430982541 - - CTV.19 [Citrus trifoliata]
12 Hb_163132_010 0.1472775418 - - -
13 Hb_005263_010 0.1515248885 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
14 Hb_009119_010 0.1769654878 - - -
15 Hb_005723_070 0.1902418913 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
16 Hb_009803_010 0.2020457531 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
17 Hb_002972_060 0.2190456658 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_082195_010 0.2281610076 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
19 Hb_000876_010 0.2318694339 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
20 Hb_116367_010 0.2341021001 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_013040_010 Hb_013040_010 Hb_001660_140 Hb_001660_140 Hb_013040_010--Hb_001660_140 Hb_182507_010 Hb_182507_010 Hb_013040_010--Hb_182507_010 Hb_004907_030 Hb_004907_030 Hb_013040_010--Hb_004907_030 Hb_033312_110 Hb_033312_110 Hb_013040_010--Hb_033312_110 Hb_005368_030 Hb_005368_030 Hb_013040_010--Hb_005368_030 Hb_000270_540 Hb_000270_540 Hb_013040_010--Hb_000270_540 Hb_001660_140--Hb_182507_010 Hb_001660_140--Hb_005368_030 Hb_001660_140--Hb_004907_030 Hb_001660_140--Hb_000270_540 Hb_001660_140--Hb_033312_110 Hb_182507_010--Hb_005368_030 Hb_182507_010--Hb_004907_030 Hb_182507_010--Hb_000270_540 Hb_182507_010--Hb_033312_110 Hb_004907_030--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_004907_030--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_004907_030--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_004907_030--Hb_007290_020 Hb_033312_110--Hb_000300_140 Hb_033312_110--Hb_068804_060 Hb_033312_110--Hb_007290_020 Hb_007356_010 Hb_007356_010 Hb_033312_110--Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_033312_110--Hb_163132_010 Hb_005263_010 Hb_005263_010 Hb_005368_030--Hb_005263_010 Hb_005368_030--Hb_000270_540 Hb_005368_030--Hb_004907_030 Hb_000270_540--Hb_004907_030 Hb_000270_540--Hb_033312_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0359379 0 0.0251919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis