Hb_162090_010

Information

Type -
Description -
Location Contig162090: 386-586
Sequence    

Annotation

kegg
ID rcu:RCOM_0029900
description hypothetical protein
nr
ID XP_012082096.1
description PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18332 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162090_010 0.0 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
2 Hb_022614_010 0.0841465473 - - -
3 Hb_006162_020 0.0912595885 - - -
4 Hb_017014_020 0.1148914198 - - -
5 Hb_005107_020 0.1539241311 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
6 Hb_000953_120 0.1649059722 - - -
7 Hb_041601_010 0.1712195861 - - -
8 Hb_000025_080 0.1720519176 - - -
9 Hb_000034_090 0.1759725961 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
10 Hb_009119_010 0.1771591316 - - -
11 Hb_006794_010 0.1873534005 - - elicitor-responsive protein [Hevea brasiliensis]
12 Hb_114079_010 0.1881121078 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
13 Hb_011200_010 0.1942878879 - - -
14 Hb_002016_030 0.1979693063 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009083_030 0.2021957386 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
16 Hb_183522_010 0.2063145712 - - Far upstream element-binding protein, putative [Ricinus communis]
17 Hb_099298_010 0.2104808391 - - -
18 Hb_002079_040 0.2135454176 - - hypothetical protein VITISV_018542 [Vitis vinifera]
19 Hb_188313_010 0.2156769965 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
20 Hb_013394_100 0.2160122493 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]

Gene co-expression network

sample Hb_162090_010 Hb_162090_010 Hb_022614_010 Hb_022614_010 Hb_162090_010--Hb_022614_010 Hb_006162_020 Hb_006162_020 Hb_162090_010--Hb_006162_020 Hb_017014_020 Hb_017014_020 Hb_162090_010--Hb_017014_020 Hb_005107_020 Hb_005107_020 Hb_162090_010--Hb_005107_020 Hb_000953_120 Hb_000953_120 Hb_162090_010--Hb_000953_120 Hb_041601_010 Hb_041601_010 Hb_162090_010--Hb_041601_010 Hb_022614_010--Hb_006162_020 Hb_022614_010--Hb_017014_020 Hb_011200_010 Hb_011200_010 Hb_022614_010--Hb_011200_010 Hb_022614_010--Hb_005107_020 Hb_013394_100 Hb_013394_100 Hb_022614_010--Hb_013394_100 Hb_006162_020--Hb_017014_020 Hb_006162_020--Hb_005107_020 Hb_000034_090 Hb_000034_090 Hb_006162_020--Hb_000034_090 Hb_183522_010 Hb_183522_010 Hb_006162_020--Hb_183522_010 Hb_009083_030 Hb_009083_030 Hb_017014_020--Hb_009083_030 Hb_188313_010 Hb_188313_010 Hb_017014_020--Hb_188313_010 Hb_000025_080 Hb_000025_080 Hb_017014_020--Hb_000025_080 Hb_005107_020--Hb_000034_090 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_012675_080 Hb_012675_080 Hb_005107_020--Hb_012675_080 Hb_005107_020--Hb_011200_010 Hb_003030_040 Hb_003030_040 Hb_005107_020--Hb_003030_040 Hb_000953_120--Hb_041601_010 Hb_009119_010 Hb_009119_010 Hb_000953_120--Hb_009119_010 Hb_002016_030 Hb_002016_030 Hb_000953_120--Hb_002016_030 Hb_000953_120--Hb_000025_080 Hb_000953_120--Hb_000034_090 Hb_000251_020 Hb_000251_020 Hb_041601_010--Hb_000251_020 Hb_041601_010--Hb_000034_090 Hb_041601_010--Hb_002016_030 Hb_041601_010--Hb_000025_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.1456 152.359 82.6996 2033.86 17.5591 1187.54
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.31 84.549 42.76 80.9465 59.4797

CAGE analysis