Hb_013394_100

Information

Type -
Description -
Location Contig13394: 95740-96036
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12040g
description hypothetical protein
nr
ID XP_011038181.1
description PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9MW51
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12040g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09556: 95501-99942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_100 0.0 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
2 Hb_182713_020 0.1303873213 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
3 Hb_000789_150 0.1580749357 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
4 Hb_099298_010 0.1626040581 - - -
5 Hb_002079_040 0.1642401483 - - hypothetical protein VITISV_018542 [Vitis vinifera]
6 Hb_011200_010 0.1656129147 - - -
7 Hb_108227_010 0.1683931188 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
8 Hb_188313_010 0.1709689903 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
9 Hb_183522_010 0.1737783329 - - Far upstream element-binding protein, putative [Ricinus communis]
10 Hb_003551_010 0.1743168076 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
11 Hb_006162_020 0.1753582895 - - -
12 Hb_073799_010 0.1769117833 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011287_040 0.1778765071 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
14 Hb_005107_020 0.1786229399 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
15 Hb_012675_080 0.1792123142 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
16 Hb_022614_010 0.1796550075 - - -
17 Hb_000015_070 0.180166749 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
18 Hb_002388_010 0.1801969537 - - -
19 Hb_001518_070 0.1826363154 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011037_020 0.1830685015 - - unknown [Picea sitchensis]

Gene co-expression network

sample Hb_013394_100 Hb_013394_100 Hb_182713_020 Hb_182713_020 Hb_013394_100--Hb_182713_020 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_108227_010 Hb_108227_010 Hb_013394_100--Hb_108227_010 Hb_188313_010 Hb_188313_010 Hb_182713_020--Hb_188313_010 Hb_000111_030 Hb_000111_030 Hb_182713_020--Hb_000111_030 Hb_009083_030 Hb_009083_030 Hb_182713_020--Hb_009083_030 Hb_073799_010 Hb_073799_010 Hb_182713_020--Hb_073799_010 Hb_011287_040 Hb_011287_040 Hb_182713_020--Hb_011287_040 Hb_012675_080 Hb_012675_080 Hb_000789_150--Hb_012675_080 Hb_000789_150--Hb_108227_010 Hb_000015_070 Hb_000015_070 Hb_000789_150--Hb_000015_070 Hb_001396_250 Hb_001396_250 Hb_000789_150--Hb_001396_250 Hb_000671_120 Hb_000671_120 Hb_000789_150--Hb_000671_120 Hb_000034_090 Hb_000034_090 Hb_099298_010--Hb_000034_090 Hb_099298_010--Hb_188313_010 Hb_011037_020 Hb_011037_020 Hb_099298_010--Hb_011037_020 Hb_006162_020 Hb_006162_020 Hb_099298_010--Hb_006162_020 Hb_099298_010--Hb_182713_020 Hb_002078_500 Hb_002078_500 Hb_002079_040--Hb_002078_500 Hb_002079_040--Hb_000034_090 Hb_003030_040 Hb_003030_040 Hb_002079_040--Hb_003030_040 Hb_002079_040--Hb_012675_080 Hb_005107_020 Hb_005107_020 Hb_002079_040--Hb_005107_020 Hb_006794_010 Hb_006794_010 Hb_011200_010--Hb_006794_010 Hb_011200_010--Hb_005107_020 Hb_022614_010 Hb_022614_010 Hb_011200_010--Hb_022614_010 Hb_011200_010--Hb_012675_080 Hb_011200_010--Hb_006162_020 Hb_108227_010--Hb_000015_070 Hb_003371_170 Hb_003371_170 Hb_108227_010--Hb_003371_170 Hb_108227_010--Hb_001396_250 Hb_108227_010--Hb_012675_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.5319 18.5675 50.7595 469.162 27.2524 264.936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.7287 107.999 19.6835 13.6357 18.5741

CAGE analysis