Hb_099298_010

Information

Type -
Description -
Location Contig99298: 11457-13982
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64803: 12817-13631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099298_010 0.0 - - -
2 Hb_000034_090 0.1471660662 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
3 Hb_013394_100 0.1626040581 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
4 Hb_188313_010 0.1748377406 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
5 Hb_011037_020 0.1763873953 - - unknown [Picea sitchensis]
6 Hb_006162_020 0.1787220374 - - -
7 Hb_182713_020 0.1883443504 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
8 Hb_041601_010 0.1904238531 - - -
9 Hb_002079_040 0.1954369431 - - hypothetical protein VITISV_018542 [Vitis vinifera]
10 Hb_005107_020 0.1960093357 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
11 Hb_002016_030 0.1965921772 - - conserved hypothetical protein [Ricinus communis]
12 Hb_022614_010 0.1996394633 - - -
13 Hb_001247_030 0.2001352253 - - -
14 Hb_009083_030 0.2010098412 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
15 Hb_011200_010 0.2063034461 - - -
16 Hb_012675_080 0.2104189393 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
17 Hb_162090_010 0.2104808391 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
18 Hb_000789_150 0.2136609469 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
19 Hb_000243_370 0.2165622817 - - hypothetical protein VITISV_010022 [Vitis vinifera]
20 Hb_017014_020 0.2178284439 - - -

Gene co-expression network

sample Hb_099298_010 Hb_099298_010 Hb_000034_090 Hb_000034_090 Hb_099298_010--Hb_000034_090 Hb_013394_100 Hb_013394_100 Hb_099298_010--Hb_013394_100 Hb_188313_010 Hb_188313_010 Hb_099298_010--Hb_188313_010 Hb_011037_020 Hb_011037_020 Hb_099298_010--Hb_011037_020 Hb_006162_020 Hb_006162_020 Hb_099298_010--Hb_006162_020 Hb_182713_020 Hb_182713_020 Hb_099298_010--Hb_182713_020 Hb_005107_020 Hb_005107_020 Hb_000034_090--Hb_005107_020 Hb_000034_090--Hb_006162_020 Hb_002079_040 Hb_002079_040 Hb_000034_090--Hb_002079_040 Hb_041601_010 Hb_041601_010 Hb_000034_090--Hb_041601_010 Hb_012675_080 Hb_012675_080 Hb_000034_090--Hb_012675_080 Hb_013394_100--Hb_182713_020 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_108227_010 Hb_108227_010 Hb_013394_100--Hb_108227_010 Hb_188313_010--Hb_182713_020 Hb_009083_030 Hb_009083_030 Hb_188313_010--Hb_009083_030 Hb_001247_030 Hb_001247_030 Hb_188313_010--Hb_001247_030 Hb_184541_010 Hb_184541_010 Hb_188313_010--Hb_184541_010 Hb_001217_010 Hb_001217_010 Hb_188313_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_188313_010--Hb_100137_010 Hb_025288_010 Hb_025288_010 Hb_011037_020--Hb_025288_010 Hb_000671_120 Hb_000671_120 Hb_011037_020--Hb_000671_120 Hb_011214_100 Hb_011214_100 Hb_011037_020--Hb_011214_100 Hb_011037_020--Hb_012675_080 Hb_000125_020 Hb_000125_020 Hb_011037_020--Hb_000125_020 Hb_011512_050 Hb_011512_050 Hb_011037_020--Hb_011512_050 Hb_162090_010 Hb_162090_010 Hb_006162_020--Hb_162090_010 Hb_022614_010 Hb_022614_010 Hb_006162_020--Hb_022614_010 Hb_017014_020 Hb_017014_020 Hb_006162_020--Hb_017014_020 Hb_006162_020--Hb_005107_020 Hb_183522_010 Hb_183522_010 Hb_006162_020--Hb_183522_010 Hb_000111_030 Hb_000111_030 Hb_182713_020--Hb_000111_030 Hb_182713_020--Hb_009083_030 Hb_073799_010 Hb_073799_010 Hb_182713_020--Hb_073799_010 Hb_011287_040 Hb_011287_040 Hb_182713_020--Hb_011287_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.413279 0.852536 19.5731 0.383603 8.09406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.34174 3.73278 0.754704 1.17082 0.801548

CAGE analysis