Hb_025288_010

Information

Type -
Description -
Location Contig25288: 892-1285
Sequence    

Annotation

kegg
ID brp:103847987
description protein unc-50 homolog
nr
ID XP_012075870.1
description PREDICTED: protein unc-50 homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D3E2X8
description Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein unc-50 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025288_010 0.0 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
2 Hb_132180_010 0.1249250342 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
3 Hb_002078_260 0.1304133962 - - unknown [Populus trichocarpa]
4 Hb_011037_020 0.1305001027 - - unknown [Picea sitchensis]
5 Hb_029142_070 0.1392103829 - - -
6 Hb_030982_020 0.1458637471 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
7 Hb_011214_100 0.147016924 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
8 Hb_007894_230 0.1521992449 - - 30S ribosomal protein S14, putative [Ricinus communis]
9 Hb_000125_020 0.1531575513 transcription factor TF Family: mTERF -
10 Hb_005694_020 0.158461887 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
11 Hb_002784_070 0.1626910783 - - BnaUnng01470D [Brassica napus]
12 Hb_041205_010 0.164610811 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002200_050 0.1650185689 - - unknown [Lotus japonicus]
14 Hb_002168_010 0.1652462027 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
15 Hb_000671_120 0.1672263442 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
16 Hb_029142_020 0.171958836 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
17 Hb_082006_010 0.1720458882 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001396_250 0.1723583034 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
19 Hb_001220_010 0.1742350763 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
20 Hb_000562_060 0.1756989876 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]

Gene co-expression network

sample Hb_025288_010 Hb_025288_010 Hb_132180_010 Hb_132180_010 Hb_025288_010--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_025288_010--Hb_002078_260 Hb_011037_020 Hb_011037_020 Hb_025288_010--Hb_011037_020 Hb_029142_070 Hb_029142_070 Hb_025288_010--Hb_029142_070 Hb_030982_020 Hb_030982_020 Hb_025288_010--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_025288_010--Hb_011214_100 Hb_132180_010--Hb_002078_260 Hb_001233_020 Hb_001233_020 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_001220_010 Hb_001220_010 Hb_132180_010--Hb_001220_010 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_011037_020--Hb_000671_120 Hb_011037_020--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_011037_020--Hb_012675_080 Hb_000125_020 Hb_000125_020 Hb_011037_020--Hb_000125_020 Hb_011512_050 Hb_011512_050 Hb_011037_020--Hb_011512_050 Hb_041205_010 Hb_041205_010 Hb_029142_070--Hb_041205_010 Hb_029142_070--Hb_002078_260 Hb_029142_070--Hb_005694_020 Hb_000641_020 Hb_000641_020 Hb_029142_070--Hb_000641_020 Hb_029142_070--Hb_132180_010 Hb_029142_070--Hb_007894_230 Hb_030982_020--Hb_011214_100 Hb_098852_010 Hb_098852_010 Hb_030982_020--Hb_098852_010 Hb_030982_020--Hb_041205_010 Hb_030982_020--Hb_132180_010 Hb_009270_030 Hb_009270_030 Hb_030982_020--Hb_009270_030 Hb_001396_250 Hb_001396_250 Hb_011214_100--Hb_001396_250 Hb_011214_100--Hb_132180_010 Hb_011214_100--Hb_002078_260 Hb_000015_070 Hb_000015_070 Hb_011214_100--Hb_000015_070 Hb_000342_160 Hb_000342_160 Hb_011214_100--Hb_000342_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42552 2.16478 1.04292 42.9896 0.426391 35.5785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5938 22.4395 9.67131 8.69543 7.88445

CAGE analysis