Hb_000635_070

Information

Type -
Description -
Location Contig635: 46625-46903
Sequence    

Annotation

kegg
ID mtr:MTR_3g085510
description hypothetical protein
nr
ID XP_012085662.1
description PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
swissprot
ID Q944J0
description Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1
trembl
ID A0A067K3H0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17948 PE=4 SV=1
Gene Ontology
ID GO:0005787
description probable signal peptidase complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51907: 46478-47082
cDNA
(Sanger)
(ID:Location)		 021_N09.ab1: 46478-47082

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_070 0.0 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
2 Hb_082006_010 0.0574977832 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009270_030 0.0853359377 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
4 Hb_016604_030 0.0917682192 - - histone H4 [Zea mays]
5 Hb_004669_030 0.1010146227 - - -
6 Hb_129672_010 0.105183049 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
7 Hb_002562_110 0.1052335589 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
8 Hb_001747_030 0.1149480821 - - hypothetical protein F383_08210 [Gossypium arboreum]
9 Hb_132180_010 0.115444952 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
10 Hb_002078_260 0.1190342859 - - unknown [Populus trichocarpa]
11 Hb_000340_520 0.1225568245 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
12 Hb_041205_010 0.1241364953 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000342_160 0.1241927643 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
14 Hb_000125_010 0.1270206119 transcription factor TF Family: mTERF -
15 Hb_001250_060 0.1275097453 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
16 Hb_000641_020 0.1280222268 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
17 Hb_011214_100 0.1329733755 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
18 Hb_000671_120 0.1349149547 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
19 Hb_001220_010 0.1358528945 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
20 Hb_066768_010 0.1362258852 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000635_070 Hb_000635_070 Hb_082006_010 Hb_082006_010 Hb_000635_070--Hb_082006_010 Hb_009270_030 Hb_009270_030 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_004669_030 Hb_004669_030 Hb_000635_070--Hb_004669_030 Hb_129672_010 Hb_129672_010 Hb_000635_070--Hb_129672_010 Hb_002562_110 Hb_002562_110 Hb_000635_070--Hb_002562_110 Hb_082006_010--Hb_002562_110 Hb_082006_010--Hb_009270_030 Hb_002078_260 Hb_002078_260 Hb_082006_010--Hb_002078_260 Hb_082006_010--Hb_129672_010 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_009270_030--Hb_129672_010 Hb_009270_030--Hb_002562_110 Hb_030982_020 Hb_030982_020 Hb_009270_030--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_009270_030--Hb_011214_100 Hb_016604_030--Hb_082006_010 Hb_000473_020 Hb_000473_020 Hb_016604_030--Hb_000473_020 Hb_005000_330 Hb_005000_330 Hb_016604_030--Hb_005000_330 Hb_182964_010 Hb_182964_010 Hb_016604_030--Hb_182964_010 Hb_003536_110 Hb_003536_110 Hb_016604_030--Hb_003536_110 Hb_000671_120 Hb_000671_120 Hb_004669_030--Hb_000671_120 Hb_001233_020 Hb_001233_020 Hb_004669_030--Hb_001233_020 Hb_132180_010 Hb_132180_010 Hb_004669_030--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_004669_030--Hb_001220_010 Hb_004669_030--Hb_002562_110 Hb_001250_060 Hb_001250_060 Hb_129672_010--Hb_001250_060 Hb_000676_080 Hb_000676_080 Hb_129672_010--Hb_000676_080 Hb_086085_020 Hb_086085_020 Hb_129672_010--Hb_086085_020 Hb_002562_110--Hb_002078_260 Hb_000016_060 Hb_000016_060 Hb_002562_110--Hb_000016_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.5379 42.3911 96.1595 477.058 70.1179 389.277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
213.836 270.36 128.918 114.259 68.6141

CAGE analysis