Hb_000676_080

Information

Type -
Description -
Location Contig676: 47944-49204
Sequence    

Annotation

kegg
ID rcu:RCOM_0534040
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_012077759.1
description PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
swissprot
ID Q9P775
description Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.16 PE=1 SV=1
trembl
ID A0A067KAS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12734 PE=4 SV=1
Gene Ontology
ID GO:0004402
description uncharacterized wd repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_080 0.0 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
2 Hb_005527_020 0.0814321538 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
3 Hb_054745_010 0.0821386543 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004157_100 0.0896291734 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
5 Hb_001250_060 0.0961358636 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
6 Hb_002271_020 0.1001182217 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
7 Hb_000453_160 0.100275269 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
8 Hb_129672_010 0.1012441064 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
9 Hb_000167_080 0.1017811259 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
10 Hb_000107_200 0.1051016806 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
11 Hb_000521_120 0.105230729 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_001014_110 0.1057751502 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
13 Hb_001191_110 0.1064576387 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
14 Hb_000594_050 0.1070722653 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
15 Hb_000696_010 0.1076786116 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
16 Hb_001935_130 0.1085427434 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
17 Hb_000056_260 0.1100328372 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
18 Hb_099878_030 0.1115475654 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
19 Hb_000302_310 0.1120428646 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
20 Hb_000107_230 0.1123246202 - - unknown [Medicago truncatula]

Gene co-expression network

sample Hb_000676_080 Hb_000676_080 Hb_005527_020 Hb_005527_020 Hb_000676_080--Hb_005527_020 Hb_054745_010 Hb_054745_010 Hb_000676_080--Hb_054745_010 Hb_004157_100 Hb_004157_100 Hb_000676_080--Hb_004157_100 Hb_001250_060 Hb_001250_060 Hb_000676_080--Hb_001250_060 Hb_002271_020 Hb_002271_020 Hb_000676_080--Hb_002271_020 Hb_000453_160 Hb_000453_160 Hb_000676_080--Hb_000453_160 Hb_001014_110 Hb_001014_110 Hb_005527_020--Hb_001014_110 Hb_005527_020--Hb_004157_100 Hb_005527_020--Hb_001250_060 Hb_000004_020 Hb_000004_020 Hb_005527_020--Hb_000004_020 Hb_005527_020--Hb_054745_010 Hb_054745_010--Hb_004157_100 Hb_000107_230 Hb_000107_230 Hb_054745_010--Hb_000107_230 Hb_006153_070 Hb_006153_070 Hb_054745_010--Hb_006153_070 Hb_000594_050 Hb_000594_050 Hb_054745_010--Hb_000594_050 Hb_002205_210 Hb_002205_210 Hb_054745_010--Hb_002205_210 Hb_004157_100--Hb_000107_230 Hb_169631_010 Hb_169631_010 Hb_004157_100--Hb_169631_010 Hb_004157_100--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_004157_100--Hb_000022_020 Hb_066768_010 Hb_066768_010 Hb_001250_060--Hb_066768_010 Hb_003929_270 Hb_003929_270 Hb_001250_060--Hb_003929_270 Hb_129672_010 Hb_129672_010 Hb_001250_060--Hb_129672_010 Hb_000735_110 Hb_000735_110 Hb_001250_060--Hb_000735_110 Hb_000326_090 Hb_000326_090 Hb_001250_060--Hb_000326_090 Hb_000167_080 Hb_000167_080 Hb_001250_060--Hb_000167_080 Hb_002473_130 Hb_002473_130 Hb_002271_020--Hb_002473_130 Hb_143398_010 Hb_143398_010 Hb_002271_020--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002271_020--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_002271_020--Hb_001287_080 Hb_005489_060 Hb_005489_060 Hb_002271_020--Hb_005489_060 Hb_001279_150 Hb_001279_150 Hb_002271_020--Hb_001279_150 Hb_002053_140 Hb_002053_140 Hb_000453_160--Hb_002053_140 Hb_000453_160--Hb_000167_080 Hb_001699_100 Hb_001699_100 Hb_000453_160--Hb_001699_100 Hb_000783_010 Hb_000783_010 Hb_000453_160--Hb_000783_010 Hb_000453_160--Hb_005489_060 Hb_001633_130 Hb_001633_130 Hb_000453_160--Hb_001633_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1098 6.58142 10.6311 23.6184 10.5692 26.2866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1428 15.8388 6.71515 13.6615 7.72987

CAGE analysis