Hb_000125_020

Information

Type transcription factor
Description TF Family: mTERF
Location Contig125: 34544-35287
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07595: 33629-115049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_020 0.0 transcription factor TF Family: mTERF -
2 Hb_000481_050 0.1184623408 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
3 Hb_002562_110 0.1374994041 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
4 Hb_004669_030 0.1410508681 - - -
5 Hb_132180_010 0.1411765975 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
6 Hb_000671_120 0.1413541308 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
7 Hb_000016_060 0.1425422666 - - mads box protein, putative [Ricinus communis]
8 Hb_011037_020 0.1469710718 - - unknown [Picea sitchensis]
9 Hb_001217_010 0.1481494539 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
10 Hb_005694_020 0.149842188 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
11 Hb_025288_010 0.1531575513 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
12 Hb_001969_020 0.1564949912 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
13 Hb_000635_070 0.157291563 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
14 Hb_001747_030 0.1582448463 - - hypothetical protein F383_08210 [Gossypium arboreum]
15 Hb_000342_160 0.1584085488 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
16 Hb_082006_010 0.1587851099 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000603_070 0.1604709038 - - -
18 Hb_000125_010 0.1611344558 transcription factor TF Family: mTERF -
19 Hb_029142_070 0.1613086461 - - -
20 Hb_089202_010 0.1618681253 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000125_020 Hb_000125_020 Hb_000481_050 Hb_000481_050 Hb_000125_020--Hb_000481_050 Hb_002562_110 Hb_002562_110 Hb_000125_020--Hb_002562_110 Hb_004669_030 Hb_004669_030 Hb_000125_020--Hb_004669_030 Hb_132180_010 Hb_132180_010 Hb_000125_020--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000125_020--Hb_000671_120 Hb_000016_060 Hb_000016_060 Hb_000125_020--Hb_000016_060 Hb_000125_010 Hb_000125_010 Hb_000481_050--Hb_000125_010 Hb_001747_030 Hb_001747_030 Hb_000481_050--Hb_001747_030 Hb_145629_010 Hb_145629_010 Hb_000481_050--Hb_145629_010 Hb_000342_160 Hb_000342_160 Hb_000481_050--Hb_000342_160 Hb_089202_010 Hb_089202_010 Hb_000481_050--Hb_089202_010 Hb_082006_010 Hb_082006_010 Hb_002562_110--Hb_082006_010 Hb_000635_070 Hb_000635_070 Hb_002562_110--Hb_000635_070 Hb_002078_260 Hb_002078_260 Hb_002562_110--Hb_002078_260 Hb_009270_030 Hb_009270_030 Hb_002562_110--Hb_009270_030 Hb_002562_110--Hb_004669_030 Hb_002562_110--Hb_000016_060 Hb_004669_030--Hb_000671_120 Hb_004669_030--Hb_000635_070 Hb_001233_020 Hb_001233_020 Hb_004669_030--Hb_001233_020 Hb_004669_030--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_004669_030--Hb_001220_010 Hb_132180_010--Hb_002078_260 Hb_132180_010--Hb_001233_020 Hb_132180_010--Hb_000671_120 Hb_132180_010--Hb_000635_070 Hb_132180_010--Hb_001220_010 Hb_000671_120--Hb_001220_010 Hb_000671_120--Hb_000342_160 Hb_000671_120--Hb_001233_020 Hb_011037_020 Hb_011037_020 Hb_000671_120--Hb_011037_020 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_148130_020 Hb_148130_020 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002960_130 Hb_002960_130 Hb_000016_060--Hb_002960_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77475 4.40456 1.30956 39.8199 2.39059 19.3614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.93969 14.9165 5.25418 7.51914 5.0985

CAGE analysis