Hb_000481_050

Information

Type -
Description -
Location Contig481: 105132-105386
Sequence    

Annotation

kegg
ID tcc:TCM_001253
description Defence response isoform 1
nr
ID XP_012075234.1
description PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2RGS5
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G047500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000481_050 0.0 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
2 Hb_000125_020 0.1184623408 transcription factor TF Family: mTERF -
3 Hb_000125_010 0.1341424268 transcription factor TF Family: mTERF -
4 Hb_001747_030 0.1361603358 - - hypothetical protein F383_08210 [Gossypium arboreum]
5 Hb_145629_010 0.1411363465 - - -
6 Hb_000342_160 0.1498781713 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
7 Hb_089202_010 0.150979298 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
8 Hb_000635_070 0.1545058623 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
9 Hb_002192_090 0.1551683055 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
10 Hb_082006_010 0.1572292393 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000111_030 0.1606839676 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
12 Hb_000671_120 0.1607604173 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
13 Hb_002344_130 0.1622815505 - - PREDICTED: copper transporter 5 [Jatropha curcas]
14 Hb_146675_010 0.1630252616 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
15 Hb_000015_070 0.1672245504 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
16 Hb_130613_010 0.1682344681 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
17 Hb_004669_030 0.1750847317 - - -
18 Hb_132180_010 0.1761948717 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
19 Hb_133724_010 0.1774984748 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011037_020 0.1827104409 - - unknown [Picea sitchensis]

Gene co-expression network

sample Hb_000481_050 Hb_000481_050 Hb_000125_020 Hb_000125_020 Hb_000481_050--Hb_000125_020 Hb_000125_010 Hb_000125_010 Hb_000481_050--Hb_000125_010 Hb_001747_030 Hb_001747_030 Hb_000481_050--Hb_001747_030 Hb_145629_010 Hb_145629_010 Hb_000481_050--Hb_145629_010 Hb_000342_160 Hb_000342_160 Hb_000481_050--Hb_000342_160 Hb_089202_010 Hb_089202_010 Hb_000481_050--Hb_089202_010 Hb_002562_110 Hb_002562_110 Hb_000125_020--Hb_002562_110 Hb_004669_030 Hb_004669_030 Hb_000125_020--Hb_004669_030 Hb_132180_010 Hb_132180_010 Hb_000125_020--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000125_020--Hb_000671_120 Hb_000016_060 Hb_000016_060 Hb_000125_020--Hb_000016_060 Hb_082006_010 Hb_082006_010 Hb_000125_010--Hb_082006_010 Hb_000125_010--Hb_001747_030 Hb_002735_050 Hb_002735_050 Hb_000125_010--Hb_002735_050 Hb_003352_040 Hb_003352_040 Hb_000125_010--Hb_003352_040 Hb_002259_160 Hb_002259_160 Hb_000125_010--Hb_002259_160 Hb_001268_050 Hb_001268_050 Hb_000125_010--Hb_001268_050 Hb_002133_020 Hb_002133_020 Hb_001747_030--Hb_002133_020 Hb_000635_070 Hb_000635_070 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_000111_030 Hb_000111_030 Hb_001747_030--Hb_000111_030 Hb_002960_130 Hb_002960_130 Hb_001747_030--Hb_002960_130 Hb_002344_130 Hb_002344_130 Hb_145629_010--Hb_002344_130 Hb_003938_160 Hb_003938_160 Hb_145629_010--Hb_003938_160 Hb_066913_010 Hb_066913_010 Hb_145629_010--Hb_066913_010 Hb_001135_140 Hb_001135_140 Hb_145629_010--Hb_001135_140 Hb_000363_330 Hb_000363_330 Hb_145629_010--Hb_000363_330 Hb_000342_160--Hb_000671_120 Hb_000342_160--Hb_000635_070 Hb_011214_100 Hb_011214_100 Hb_000342_160--Hb_011214_100 Hb_000342_160--Hb_082006_010 Hb_000342_160--Hb_000125_010 Hb_000342_160--Hb_004669_030 Hb_004466_060 Hb_004466_060 Hb_089202_010--Hb_004466_060 Hb_089202_010--Hb_000342_160 Hb_003371_170 Hb_003371_170 Hb_089202_010--Hb_003371_170 Hb_000168_010 Hb_000168_010 Hb_089202_010--Hb_000168_010 Hb_089202_010--Hb_000125_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
117.6 236.743 87.6119 960.457 42.9445 581.097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
234.837 393.23 210.551 128.357 109.066

CAGE analysis