Hb_089202_010

Information

Type -
Description -
Location Contig89202: 895-1257
Sequence    

Annotation

kegg
ID cit:102629022
description serine/threonine-protein phosphatase PP2A catalytic subunit-like
nr
ID XP_009794958.1
description PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
swissprot
ID Q9ZSE4
description Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Hevea brasiliensis GN=PP2A PE=2 SV=1
trembl
ID A0A067H584
description Serine/threonine-protein phosphatase OS=Citrus sinensis GN=CISIN_1g021866mg PE=3 SV=1
Gene Ontology
ID GO:0005737
description serine threonine-protein phosphatase pp2a catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089202_010 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
2 Hb_004466_060 0.1317909232 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
3 Hb_000342_160 0.1448290329 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
4 Hb_000481_050 0.150979298 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
5 Hb_003371_170 0.1568734727 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000168_010 0.1612759912 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
7 Hb_000125_020 0.1618681253 transcription factor TF Family: mTERF -
8 Hb_011037_020 0.162571218 - - unknown [Picea sitchensis]
9 Hb_002192_090 0.1632210115 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
10 Hb_001518_070 0.1635499938 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009083_030 0.1636736952 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
12 Hb_001747_030 0.1663397827 - - hypothetical protein F383_08210 [Gossypium arboreum]
13 Hb_013749_010 0.1674682607 - - conserved hypothetical protein [Ricinus communis]
14 Hb_182713_020 0.168494903 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
15 Hb_000125_010 0.169595734 transcription factor TF Family: mTERF -
16 Hb_002562_110 0.1753179491 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
17 Hb_002611_030 0.1767701532 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
18 Hb_009270_030 0.1789026156 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
19 Hb_100137_010 0.1798811748 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
20 Hb_082006_010 0.1803655361 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_089202_010 Hb_089202_010 Hb_004466_060 Hb_004466_060 Hb_089202_010--Hb_004466_060 Hb_000342_160 Hb_000342_160 Hb_089202_010--Hb_000342_160 Hb_000481_050 Hb_000481_050 Hb_089202_010--Hb_000481_050 Hb_003371_170 Hb_003371_170 Hb_089202_010--Hb_003371_170 Hb_000168_010 Hb_000168_010 Hb_089202_010--Hb_000168_010 Hb_000125_020 Hb_000125_020 Hb_089202_010--Hb_000125_020 Hb_000053_030 Hb_000053_030 Hb_004466_060--Hb_000053_030 Hb_100137_010 Hb_100137_010 Hb_004466_060--Hb_100137_010 Hb_004466_060--Hb_000168_010 Hb_002611_030 Hb_002611_030 Hb_004466_060--Hb_002611_030 Hb_002562_110 Hb_002562_110 Hb_004466_060--Hb_002562_110 Hb_000671_120 Hb_000671_120 Hb_000342_160--Hb_000671_120 Hb_000635_070 Hb_000635_070 Hb_000342_160--Hb_000635_070 Hb_011214_100 Hb_011214_100 Hb_000342_160--Hb_011214_100 Hb_082006_010 Hb_082006_010 Hb_000342_160--Hb_082006_010 Hb_000125_010 Hb_000125_010 Hb_000342_160--Hb_000125_010 Hb_004669_030 Hb_004669_030 Hb_000342_160--Hb_004669_030 Hb_000481_050--Hb_000125_020 Hb_000481_050--Hb_000125_010 Hb_001747_030 Hb_001747_030 Hb_000481_050--Hb_001747_030 Hb_145629_010 Hb_145629_010 Hb_000481_050--Hb_145629_010 Hb_000481_050--Hb_000342_160 Hb_000015_070 Hb_000015_070 Hb_003371_170--Hb_000015_070 Hb_006663_090 Hb_006663_090 Hb_003371_170--Hb_006663_090 Hb_106415_010 Hb_106415_010 Hb_003371_170--Hb_106415_010 Hb_108227_010 Hb_108227_010 Hb_003371_170--Hb_108227_010 Hb_076875_020 Hb_076875_020 Hb_003371_170--Hb_076875_020 Hb_068014_010 Hb_068014_010 Hb_003371_170--Hb_068014_010 Hb_000215_310 Hb_000215_310 Hb_000168_010--Hb_000215_310 Hb_099116_010 Hb_099116_010 Hb_000168_010--Hb_099116_010 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_000586_030 Hb_000586_030 Hb_000168_010--Hb_000586_030 Hb_002611_020 Hb_002611_020 Hb_000168_010--Hb_002611_020 Hb_000125_020--Hb_002562_110 Hb_000125_020--Hb_004669_030 Hb_132180_010 Hb_132180_010 Hb_000125_020--Hb_132180_010 Hb_000125_020--Hb_000671_120 Hb_000016_060 Hb_000016_060 Hb_000125_020--Hb_000016_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0314 15.5606 17.5735 157.602 12.0677 103.954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4764 39.5446 39.9705 23.2579 19.9075

CAGE analysis