Hb_002611_030

Information

Type -
Description -
Location Contig2611: 73636-75267
Sequence    

Annotation

kegg
ID csv:101228038
description alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like
nr
ID XP_012073899.1
description PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
swissprot
ID Q9XGM8
description Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Arabidopsis thaliana GN=GNTI PE=1 SV=1
trembl
ID A0A067KKB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07894 PE=4 SV=1
Gene Ontology
ID GO:0005768
description alpha- -mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27331: 20332-75922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002611_030 0.0 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
2 Hb_017014_010 0.1122045768 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
3 Hb_100137_010 0.1277214038 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
4 Hb_004466_060 0.1345969403 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
5 Hb_048702_010 0.1347267388 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
6 Hb_009083_030 0.1514059985 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
7 Hb_010003_010 0.1630792085 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
8 Hb_000168_010 0.1645850465 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
9 Hb_000077_290 0.1652264797 - - conserved hypothetical protein [Ricinus communis]
10 Hb_165402_010 0.1695490672 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
11 Hb_000053_030 0.1695580956 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
12 Hb_094437_040 0.1712528774 - - ankyrin repeat family protein, partial [Manihot esculenta]
13 Hb_102591_010 0.1756337819 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
14 Hb_089202_010 0.1767701532 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
15 Hb_184541_010 0.1848113787 - - PREDICTED: selT-like protein [Jatropha curcas]
16 Hb_000889_100 0.1851487046 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
17 Hb_007456_020 0.1860819564 - - unknown [Lotus japonicus]
18 Hb_060391_010 0.1885479245 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_005170_010 0.1905499422 - - -
20 Hb_006634_110 0.1920851764 - - BnaC04g40780D [Brassica napus]

Gene co-expression network

sample Hb_002611_030 Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_002611_030--Hb_017014_010 Hb_100137_010 Hb_100137_010 Hb_002611_030--Hb_100137_010 Hb_004466_060 Hb_004466_060 Hb_002611_030--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_002611_030--Hb_048702_010 Hb_009083_030 Hb_009083_030 Hb_002611_030--Hb_009083_030 Hb_010003_010 Hb_010003_010 Hb_002611_030--Hb_010003_010 Hb_000889_100 Hb_000889_100 Hb_017014_010--Hb_000889_100 Hb_017014_010--Hb_010003_010 Hb_017014_010--Hb_100137_010 Hb_017014_010--Hb_048702_010 Hb_000077_290 Hb_000077_290 Hb_017014_010--Hb_000077_290 Hb_100137_010--Hb_004466_060 Hb_100137_010--Hb_048702_010 Hb_100137_010--Hb_000077_290 Hb_122636_010 Hb_122636_010 Hb_100137_010--Hb_122636_010 Hb_001217_010 Hb_001217_010 Hb_100137_010--Hb_001217_010 Hb_000053_030 Hb_000053_030 Hb_004466_060--Hb_000053_030 Hb_000168_010 Hb_000168_010 Hb_004466_060--Hb_000168_010 Hb_089202_010 Hb_089202_010 Hb_004466_060--Hb_089202_010 Hb_002562_110 Hb_002562_110 Hb_004466_060--Hb_002562_110 Hb_006634_110 Hb_006634_110 Hb_048702_010--Hb_006634_110 Hb_048702_010--Hb_122636_010 Hb_010577_010 Hb_010577_010 Hb_048702_010--Hb_010577_010 Hb_188313_010 Hb_188313_010 Hb_009083_030--Hb_188313_010 Hb_182713_020 Hb_182713_020 Hb_009083_030--Hb_182713_020 Hb_009083_030--Hb_100137_010 Hb_184541_010 Hb_184541_010 Hb_009083_030--Hb_184541_010 Hb_017014_020 Hb_017014_020 Hb_009083_030--Hb_017014_020 Hb_010003_010--Hb_000889_100 Hb_000094_290 Hb_000094_290 Hb_010003_010--Hb_000094_290 Hb_010003_010--Hb_000077_290 Hb_000230_180 Hb_000230_180 Hb_010003_010--Hb_000230_180 Hb_051257_010 Hb_051257_010 Hb_010003_010--Hb_051257_010 Hb_005170_010 Hb_005170_010 Hb_010003_010--Hb_005170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.30547 8.71482 19.3343 124.659 11.6751 71.1857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.53554 5.65558 14.7346 19.8635 26.7074

CAGE analysis