Hb_006634_110

Information

Type -
Description -
Location Contig6634: 112603-112935
Sequence    

Annotation

kegg
ID atr:s00007p00096840
description AMTR_s00007p00096840; hypothetical protein
nr
ID CDX97861.1
description BnaC04g40780D [Brassica napus]
swissprot
ID Q0WMV8
description PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1
trembl
ID A0A0D3G1A3
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0005689
description phd finger-like domain-containing protein 5b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_110 0.0 - - BnaC04g40780D [Brassica napus]
2 Hb_122636_010 0.0946279448 - - dienelactone hydrolase family protein [Populus trichocarpa]
3 Hb_048702_010 0.1022030405 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
4 Hb_100137_010 0.1397678988 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
5 Hb_010577_010 0.1468144073 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
6 Hb_053709_040 0.1536388007 - - putative actin-97 protein [Linum usitatissimum]
7 Hb_000671_130 0.1562113686 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
8 Hb_000950_030 0.1579592977 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
9 Hb_002660_110 0.1606207896 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
10 Hb_003207_150 0.1627581841 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
11 Hb_002157_270 0.1637717302 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
12 Hb_001894_070 0.1642604663 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
13 Hb_091349_010 0.1668053913 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
14 Hb_008185_020 0.1668881915 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
15 Hb_007632_100 0.1674834413 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
16 Hb_002760_050 0.1680770369 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004079_050 0.1695308034 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
18 Hb_001004_080 0.1711376127 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
19 Hb_010984_040 0.1719893774 - - hypothetical protein M569_17286, partial [Genlisea aurea]
20 Hb_184541_010 0.1733464582 - - PREDICTED: selT-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_006634_110 Hb_006634_110 Hb_122636_010 Hb_122636_010 Hb_006634_110--Hb_122636_010 Hb_048702_010 Hb_048702_010 Hb_006634_110--Hb_048702_010 Hb_100137_010 Hb_100137_010 Hb_006634_110--Hb_100137_010 Hb_010577_010 Hb_010577_010 Hb_006634_110--Hb_010577_010 Hb_053709_040 Hb_053709_040 Hb_006634_110--Hb_053709_040 Hb_000671_130 Hb_000671_130 Hb_006634_110--Hb_000671_130 Hb_122636_010--Hb_000671_130 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_122636_010--Hb_100137_010 Hb_048702_010--Hb_100137_010 Hb_002611_030 Hb_002611_030 Hb_048702_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_048702_010--Hb_017014_010 Hb_048702_010--Hb_122636_010 Hb_048702_010--Hb_010577_010 Hb_004466_060 Hb_004466_060 Hb_100137_010--Hb_004466_060 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_100137_010--Hb_001217_010 Hb_091349_010 Hb_091349_010 Hb_010577_010--Hb_091349_010 Hb_001969_020 Hb_001969_020 Hb_010577_010--Hb_001969_020 Hb_000683_100 Hb_000683_100 Hb_010577_010--Hb_000683_100 Hb_010577_010--Hb_122636_010 Hb_010931_140 Hb_010931_140 Hb_010577_010--Hb_010931_140 Hb_007574_070 Hb_007574_070 Hb_010577_010--Hb_007574_070 Hb_053709_040--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_053709_040--Hb_001366_170 Hb_034726_010 Hb_034726_010 Hb_053709_040--Hb_034726_010 Hb_008185_020 Hb_008185_020 Hb_053709_040--Hb_008185_020 Hb_007632_100 Hb_007632_100 Hb_053709_040--Hb_007632_100 Hb_000177_110 Hb_000177_110 Hb_053709_040--Hb_000177_110 Hb_000671_130--Hb_091349_010 Hb_003207_020 Hb_003207_020 Hb_000671_130--Hb_003207_020 Hb_033152_070 Hb_033152_070 Hb_000671_130--Hb_033152_070 Hb_000107_110 Hb_000107_110 Hb_000671_130--Hb_000107_110 Hb_048476_060 Hb_048476_060 Hb_000671_130--Hb_048476_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75878 1.51424 5.26087 39.1006 3.21359 7.8528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62599 5.27665 3.43014 3.72876 10.4818

CAGE analysis