Hb_008185_020

Information

Type -
Description -
Location Contig8185: 25266-27026
Sequence    

Annotation

kegg
ID rcu:RCOM_1277260
description RING-H2 finger protein ATL3J, putative
nr
ID XP_002533895.1
description RING-H2 finger protein ATL3J, putative [Ricinus communis]
swissprot
ID Q9SI09
description Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1
trembl
ID B9T6M6
description RING-H2 finger protein ATL3J, putative OS=Ricinus communis GN=RCOM_1277260 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase xerico

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59518: 26033-26931 , PASA_asmbl_59519: 24993-26931
cDNA
(Sanger)
(ID:Location)		 005_F13.ab1: 25222-26931 , 046_I03.ab1: 26135-26931

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008185_020 0.0 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
2 Hb_184541_010 0.1307422152 - - PREDICTED: selT-like protein [Jatropha curcas]
3 Hb_053709_040 0.1310488309 - - putative actin-97 protein [Linum usitatissimum]
4 Hb_001247_030 0.1458264474 - - -
5 Hb_004125_070 0.1541352726 - - Glycolipid transfer protein, putative [Ricinus communis]
6 Hb_011918_010 0.1587235073 - - hypothetical protein glysoja_041948 [Glycine soja]
7 Hb_030992_010 0.1591405114 - - acetylornithine aminotransferase, putative [Ricinus communis]
8 Hb_188313_010 0.1591538089 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
9 Hb_007632_100 0.1599047446 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
10 Hb_003058_230 0.1624633401 - - copper ion binding protein, putative [Ricinus communis]
11 Hb_054865_160 0.1631508921 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
12 Hb_006634_110 0.1668881915 - - BnaC04g40780D [Brassica napus]
13 Hb_066514_010 0.1714322547 - - hypothetical protein RCOM_0204720 [Ricinus communis]
14 Hb_011287_040 0.1715466254 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
15 Hb_002900_100 0.1718853986 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
16 Hb_004117_330 0.1720094357 - - conserved hypothetical protein [Ricinus communis]
17 Hb_122636_010 0.174591464 - - dienelactone hydrolase family protein [Populus trichocarpa]
18 Hb_182713_020 0.1766560868 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
19 Hb_073799_010 0.1793481246 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003207_150 0.1798150835 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]

Gene co-expression network

sample Hb_008185_020 Hb_008185_020 Hb_184541_010 Hb_184541_010 Hb_008185_020--Hb_184541_010 Hb_053709_040 Hb_053709_040 Hb_008185_020--Hb_053709_040 Hb_001247_030 Hb_001247_030 Hb_008185_020--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_008185_020--Hb_004125_070 Hb_011918_010 Hb_011918_010 Hb_008185_020--Hb_011918_010 Hb_030992_010 Hb_030992_010 Hb_008185_020--Hb_030992_010 Hb_184541_010--Hb_004125_070 Hb_188313_010 Hb_188313_010 Hb_184541_010--Hb_188313_010 Hb_184541_010--Hb_011918_010 Hb_009083_030 Hb_009083_030 Hb_184541_010--Hb_009083_030 Hb_100137_010 Hb_100137_010 Hb_184541_010--Hb_100137_010 Hb_003207_150 Hb_003207_150 Hb_053709_040--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_053709_040--Hb_001366_170 Hb_034726_010 Hb_034726_010 Hb_053709_040--Hb_034726_010 Hb_007632_100 Hb_007632_100 Hb_053709_040--Hb_007632_100 Hb_000177_110 Hb_000177_110 Hb_053709_040--Hb_000177_110 Hb_001247_030--Hb_188313_010 Hb_001247_030--Hb_004125_070 Hb_000028_260 Hb_000028_260 Hb_001247_030--Hb_000028_260 Hb_001247_030--Hb_184541_010 Hb_004079_050 Hb_004079_050 Hb_001247_030--Hb_004079_050 Hb_004125_070--Hb_011918_010 Hb_004125_070--Hb_188313_010 Hb_004125_070--Hb_009083_030 Hb_007575_090 Hb_007575_090 Hb_011918_010--Hb_007575_090 Hb_066514_010 Hb_066514_010 Hb_011918_010--Hb_066514_010 Hb_002900_100 Hb_002900_100 Hb_011918_010--Hb_002900_100 Hb_002490_030 Hb_002490_030 Hb_011918_010--Hb_002490_030 Hb_000796_020 Hb_000796_020 Hb_030992_010--Hb_000796_020 Hb_122636_010 Hb_122636_010 Hb_030992_010--Hb_122636_010 Hb_000776_060 Hb_000776_060 Hb_030992_010--Hb_000776_060 Hb_000062_090 Hb_000062_090 Hb_030992_010--Hb_000062_090 Hb_000008_190 Hb_000008_190 Hb_030992_010--Hb_000008_190 Hb_030992_010--Hb_000177_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.85416 9.22154 39.363 184.729 14.6698 28.8561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7218 23.5586 8.88194 11.6044 12.6961

CAGE analysis