Hb_000028_260

Information

Type -
Description -
Location Contig28: 242078-242296
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa014437mg
description hypothetical protein
nr
ID KHN45262.1
description hypothetical protein glysoja_041948 [Glycine soja]
swissprot
ID -
description -
trembl
ID I1KJ78
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29199: 242049-242611
cDNA
(Sanger)
(ID:Location)		 002_H23.ab1: 242053-242611 , 025_L16.ab1: 242049-242474

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_260 0.0 - - hypothetical protein glysoja_041948 [Glycine soja]
2 Hb_001247_030 0.1434300527 - - -
3 Hb_004125_070 0.1839524177 - - Glycolipid transfer protein, putative [Ricinus communis]
4 Hb_000649_340 0.1990752275 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
5 Hb_000483_400 0.2031463069 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
6 Hb_000157_050 0.2033067755 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000796_020 0.2104435293 - - ADP-ribosylation factor [Phaseolus vulgaris]
8 Hb_178968_040 0.2127093807 - - conserved hypothetical protein [Ricinus communis]
9 Hb_123301_010 0.2211778014 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008185_020 0.2237098117 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
11 Hb_004079_050 0.2276134871 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
12 Hb_034299_070 0.2286883896 - - actin binding protein, putative [Ricinus communis]
13 Hb_001635_010 0.2303913756 - - -
14 Hb_011918_010 0.2311881739 - - hypothetical protein glysoja_041948 [Glycine soja]
15 Hb_000258_060 0.2371703428 - - conserved hypothetical protein [Ricinus communis]
16 Hb_184541_010 0.2384523154 - - PREDICTED: selT-like protein [Jatropha curcas]
17 Hb_000164_010 0.2388577035 - - small heat-shock protein, putative [Ricinus communis]
18 Hb_188313_010 0.2397823633 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
19 Hb_000776_060 0.2423186795 - - histone H4 [Zea mays]
20 Hb_001369_500 0.2462791032 - - endo-1,4-beta-glucanase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000028_260 Hb_000028_260 Hb_001247_030 Hb_001247_030 Hb_000028_260--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_000028_260--Hb_004125_070 Hb_000649_340 Hb_000649_340 Hb_000028_260--Hb_000649_340 Hb_000483_400 Hb_000483_400 Hb_000028_260--Hb_000483_400 Hb_000157_050 Hb_000157_050 Hb_000028_260--Hb_000157_050 Hb_000796_020 Hb_000796_020 Hb_000028_260--Hb_000796_020 Hb_188313_010 Hb_188313_010 Hb_001247_030--Hb_188313_010 Hb_001247_030--Hb_004125_070 Hb_008185_020 Hb_008185_020 Hb_001247_030--Hb_008185_020 Hb_184541_010 Hb_184541_010 Hb_001247_030--Hb_184541_010 Hb_004079_050 Hb_004079_050 Hb_001247_030--Hb_004079_050 Hb_004125_070--Hb_184541_010 Hb_011918_010 Hb_011918_010 Hb_004125_070--Hb_011918_010 Hb_004125_070--Hb_008185_020 Hb_004125_070--Hb_188313_010 Hb_009083_030 Hb_009083_030 Hb_004125_070--Hb_009083_030 Hb_123301_010 Hb_123301_010 Hb_000649_340--Hb_123301_010 Hb_128473_010 Hb_128473_010 Hb_000649_340--Hb_128473_010 Hb_000776_060 Hb_000776_060 Hb_000649_340--Hb_000776_060 Hb_001195_410 Hb_001195_410 Hb_000649_340--Hb_001195_410 Hb_000046_270 Hb_000046_270 Hb_000649_340--Hb_000046_270 Hb_000483_400--Hb_000796_020 Hb_000240_120 Hb_000240_120 Hb_000483_400--Hb_000240_120 Hb_175933_010 Hb_175933_010 Hb_000483_400--Hb_175933_010 Hb_004453_070 Hb_004453_070 Hb_000483_400--Hb_004453_070 Hb_000683_100 Hb_000683_100 Hb_000483_400--Hb_000683_100 Hb_000217_020 Hb_000217_020 Hb_000483_400--Hb_000217_020 Hb_001635_010 Hb_001635_010 Hb_000157_050--Hb_001635_010 Hb_001597_050 Hb_001597_050 Hb_000157_050--Hb_001597_050 Hb_178968_040 Hb_178968_040 Hb_000157_050--Hb_178968_040 Hb_002228_080 Hb_002228_080 Hb_000157_050--Hb_002228_080 Hb_001486_270 Hb_001486_270 Hb_000157_050--Hb_001486_270 Hb_000796_020--Hb_000683_100 Hb_000796_020--Hb_000776_060 Hb_030992_010 Hb_030992_010 Hb_000796_020--Hb_030992_010 Hb_122636_010 Hb_122636_010 Hb_000796_020--Hb_122636_010 Hb_000796_020--Hb_004453_070 Hb_000062_090 Hb_000062_090 Hb_000796_020--Hb_000062_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.996917 28.5758 65.6512 525.184 2.08014 43.4212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.8587 70.3356 70.1025 16.8892 10.6594

CAGE analysis