Hb_000649_340

Information

Type -
Description -
Location Contig649: 333384-335927
Sequence    

Annotation

kegg
ID tcc:TCM_011012
description Dynein light chain type 1 family protein
nr
ID XP_012072280.1
description PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
swissprot
ID Q86A88
description Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1
trembl
ID A0A061E8U7
description Dynein light chain type 1 family protein OS=Theobroma cacao GN=TCM_011012 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52512: 333479-335630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_340 0.0 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
2 Hb_123301_010 0.1655325918 - - conserved hypothetical protein [Ricinus communis]
3 Hb_128473_010 0.1841094532 - - -
4 Hb_000776_060 0.1899842132 - - histone H4 [Zea mays]
5 Hb_001195_410 0.1925387303 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
6 Hb_000028_260 0.1990752275 - - hypothetical protein glysoja_041948 [Glycine soja]
7 Hb_000046_270 0.1992354414 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
8 Hb_000796_020 0.2006891667 - - ADP-ribosylation factor [Phaseolus vulgaris]
9 Hb_002243_050 0.2033545272 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
10 Hb_011918_010 0.2081004244 - - hypothetical protein glysoja_041948 [Glycine soja]
11 Hb_186647_010 0.2098545881 - - -
12 Hb_131684_010 0.2113589557 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000483_400 0.2115665424 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
14 Hb_000637_020 0.2124132122 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
15 Hb_004453_070 0.212878738 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
16 Hb_030992_010 0.2175130199 - - acetylornithine aminotransferase, putative [Ricinus communis]
17 Hb_008185_020 0.2199066393 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
18 Hb_130613_010 0.2209118825 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
19 Hb_126711_010 0.2244831829 - - JAZ10 [Hevea brasiliensis]
20 Hb_002675_090 0.2269435028 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000649_340 Hb_000649_340 Hb_123301_010 Hb_123301_010 Hb_000649_340--Hb_123301_010 Hb_128473_010 Hb_128473_010 Hb_000649_340--Hb_128473_010 Hb_000776_060 Hb_000776_060 Hb_000649_340--Hb_000776_060 Hb_001195_410 Hb_001195_410 Hb_000649_340--Hb_001195_410 Hb_000028_260 Hb_000028_260 Hb_000649_340--Hb_000028_260 Hb_000046_270 Hb_000046_270 Hb_000649_340--Hb_000046_270 Hb_002686_260 Hb_002686_260 Hb_123301_010--Hb_002686_260 Hb_003226_130 Hb_003226_130 Hb_123301_010--Hb_003226_130 Hb_002490_030 Hb_002490_030 Hb_123301_010--Hb_002490_030 Hb_000313_280 Hb_000313_280 Hb_123301_010--Hb_000313_280 Hb_126711_010 Hb_126711_010 Hb_123301_010--Hb_126711_010 Hb_000261_170 Hb_000261_170 Hb_128473_010--Hb_000261_170 Hb_073799_010 Hb_073799_010 Hb_128473_010--Hb_073799_010 Hb_000311_040 Hb_000311_040 Hb_128473_010--Hb_000311_040 Hb_008185_020 Hb_008185_020 Hb_128473_010--Hb_008185_020 Hb_000483_400 Hb_000483_400 Hb_128473_010--Hb_000483_400 Hb_000796_020 Hb_000796_020 Hb_000776_060--Hb_000796_020 Hb_000062_090 Hb_000062_090 Hb_000776_060--Hb_000062_090 Hb_030992_010 Hb_030992_010 Hb_000776_060--Hb_030992_010 Hb_012760_050 Hb_012760_050 Hb_000776_060--Hb_012760_050 Hb_000776_060--Hb_001195_410 Hb_006711_090 Hb_006711_090 Hb_000776_060--Hb_006711_090 Hb_118507_010 Hb_118507_010 Hb_001195_410--Hb_118507_010 Hb_000008_190 Hb_000008_190 Hb_001195_410--Hb_000008_190 Hb_004453_070 Hb_004453_070 Hb_001195_410--Hb_004453_070 Hb_001195_410--Hb_012760_050 Hb_000172_510 Hb_000172_510 Hb_001195_410--Hb_000172_510 Hb_001247_030 Hb_001247_030 Hb_000028_260--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_000028_260--Hb_004125_070 Hb_000028_260--Hb_000483_400 Hb_000157_050 Hb_000157_050 Hb_000028_260--Hb_000157_050 Hb_000028_260--Hb_000796_020 Hb_000046_270--Hb_000483_400 Hb_000046_270--Hb_004453_070 Hb_000046_270--Hb_128473_010 Hb_062038_010 Hb_062038_010 Hb_000046_270--Hb_062038_010 Hb_000046_270--Hb_000776_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238471 2.73476 3.27044 12.2171 0.511662 1.10976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6956 2.49973 1.10174 0.472749 0.111116

CAGE analysis