Hb_012760_050

Information

Type -
Description -
Location Contig12760: 24409-26442
Sequence    

Annotation

kegg
ID rcu:RCOM_0782600
description RING-H2 finger protein ATL4M, putative
nr
ID XP_002530631.1
description RING-H2 finger protein ATL4M, putative [Ricinus communis]
swissprot
ID Q8GT75
description NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2
trembl
ID B9SXB2
description RING-H2 finger protein ATL4M, putative OS=Ricinus communis GN=RCOM_0782600 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nep1-interacting protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08416: 24460-26505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_050 0.0 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
2 Hb_013394_050 0.1193648879 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
3 Hb_019181_030 0.1250052543 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
4 Hb_048476_060 0.1339240789 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
5 Hb_000062_090 0.13438305 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
6 Hb_001195_410 0.1413703156 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
7 Hb_002217_500 0.1420725585 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
8 Hb_001824_040 0.1444285379 - - hypothetical protein M569_11359, partial [Genlisea aurea]
9 Hb_000776_060 0.1453449982 - - histone H4 [Zea mays]
10 Hb_000008_190 0.1465755208 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
11 Hb_002133_020 0.1466780138 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007926_050 0.1491085802 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
13 Hb_000671_130 0.1493800982 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
14 Hb_000244_170 0.150012387 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
15 Hb_000402_130 0.150322349 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
16 Hb_000197_020 0.1503873765 - - PREDICTED: protein RER1A [Jatropha curcas]
17 Hb_005701_120 0.1514332635 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
18 Hb_000796_020 0.1541985387 - - ADP-ribosylation factor [Phaseolus vulgaris]
19 Hb_001454_230 0.1557949221 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
20 Hb_007894_010 0.1566536671 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]

Gene co-expression network

sample Hb_012760_050 Hb_012760_050 Hb_013394_050 Hb_013394_050 Hb_012760_050--Hb_013394_050 Hb_019181_030 Hb_019181_030 Hb_012760_050--Hb_019181_030 Hb_048476_060 Hb_048476_060 Hb_012760_050--Hb_048476_060 Hb_000062_090 Hb_000062_090 Hb_012760_050--Hb_000062_090 Hb_001195_410 Hb_001195_410 Hb_012760_050--Hb_001195_410 Hb_002217_500 Hb_002217_500 Hb_012760_050--Hb_002217_500 Hb_000069_640 Hb_000069_640 Hb_013394_050--Hb_000069_640 Hb_013394_050--Hb_019181_030 Hb_000197_020 Hb_000197_020 Hb_013394_050--Hb_000197_020 Hb_000244_170 Hb_000244_170 Hb_013394_050--Hb_000244_170 Hb_000742_020 Hb_000742_020 Hb_013394_050--Hb_000742_020 Hb_004055_120 Hb_004055_120 Hb_013394_050--Hb_004055_120 Hb_000152_600 Hb_000152_600 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_019181_030--Hb_000197_020 Hb_002193_060 Hb_002193_060 Hb_048476_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_048476_060--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_048476_060--Hb_003207_020 Hb_000110_050 Hb_000110_050 Hb_048476_060--Hb_000110_050 Hb_000402_130 Hb_000402_130 Hb_048476_060--Hb_000402_130 Hb_002007_320 Hb_002007_320 Hb_048476_060--Hb_002007_320 Hb_000062_090--Hb_000402_130 Hb_000062_090--Hb_048476_060 Hb_006711_090 Hb_006711_090 Hb_000062_090--Hb_006711_090 Hb_004158_020 Hb_004158_020 Hb_000062_090--Hb_004158_020 Hb_000671_130 Hb_000671_130 Hb_000062_090--Hb_000671_130 Hb_012362_030 Hb_012362_030 Hb_000062_090--Hb_012362_030 Hb_118507_010 Hb_118507_010 Hb_001195_410--Hb_118507_010 Hb_000008_190 Hb_000008_190 Hb_001195_410--Hb_000008_190 Hb_004453_070 Hb_004453_070 Hb_001195_410--Hb_004453_070 Hb_000172_510 Hb_000172_510 Hb_001195_410--Hb_000172_510 Hb_000776_060 Hb_000776_060 Hb_001195_410--Hb_000776_060 Hb_001474_020 Hb_001474_020 Hb_002217_500--Hb_001474_020 Hb_003975_010 Hb_003975_010 Hb_002217_500--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_002217_500--Hb_002046_060 Hb_001691_040 Hb_001691_040 Hb_002217_500--Hb_001691_040 Hb_002450_030 Hb_002450_030 Hb_002217_500--Hb_002450_030 Hb_023344_110 Hb_023344_110 Hb_002217_500--Hb_023344_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.09996 16.8579 27.7296 71.7146 13.1323 10.3596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.322 19.4823 20.309 11.9393 14.9034

CAGE analysis