Hb_006711_090

Information

Type -
Description -
Location Contig6711: 80667-83361
Sequence    

Annotation

kegg
ID rcu:RCOM_1336080
description sphingolipid fatty acid alpha hydroxylase
nr
ID XP_012075925.1
description PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
swissprot
ID O48916
description Fatty acid 2-hydroxylase 1 OS=Arabidopsis thaliana GN=FAH1 PE=1 SV=1
trembl
ID A0A067KS13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11137 PE=4 SV=1
Gene Ontology
ID GO:0016021
description fatty acid 2-hydroxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53447: 78946-83230 , PASA_asmbl_53448: 79519-79696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006711_090 0.0 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
2 Hb_002007_320 0.1054811283 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
3 Hb_000062_090 0.1170731423 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
4 Hb_000935_040 0.1236965829 - - Uncharacterized protein isoform 2 [Theobroma cacao]
5 Hb_001904_050 0.1241707344 - - alpha-tubulin 1 [Hevea brasiliensis]
6 Hb_004158_020 0.1242119417 - - Rab1 [Hevea brasiliensis]
7 Hb_188281_030 0.1309764646 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
8 Hb_003813_060 0.1311125862 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000023_310 0.1325356051 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
10 Hb_048476_060 0.1347460712 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
11 Hb_000012_080 0.135483218 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
12 Hb_003602_060 0.1439996703 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
13 Hb_001369_630 0.1442161209 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
14 Hb_002193_060 0.145724195 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
15 Hb_000742_020 0.1468417467 - - ARF GTPase activator, putative [Ricinus communis]
16 Hb_000765_060 0.1479388722 - - Alcohol dehydrogenase-like 6 [Glycine soja]
17 Hb_093458_010 0.1510453684 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
18 Hb_001329_070 0.1514442562 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_000110_050 0.1520389608 - - -
20 Hb_154038_020 0.1531181855 - - hypothetical protein JCGZ_05648 [Jatropha curcas]

Gene co-expression network

sample Hb_006711_090 Hb_006711_090 Hb_002007_320 Hb_002007_320 Hb_006711_090--Hb_002007_320 Hb_000062_090 Hb_000062_090 Hb_006711_090--Hb_000062_090 Hb_000935_040 Hb_000935_040 Hb_006711_090--Hb_000935_040 Hb_001904_050 Hb_001904_050 Hb_006711_090--Hb_001904_050 Hb_004158_020 Hb_004158_020 Hb_006711_090--Hb_004158_020 Hb_188281_030 Hb_188281_030 Hb_006711_090--Hb_188281_030 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_003371_070 Hb_003371_070 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_000023_310 Hb_000023_310 Hb_002007_320--Hb_000023_310 Hb_000402_130 Hb_000402_130 Hb_000062_090--Hb_000402_130 Hb_048476_060 Hb_048476_060 Hb_000062_090--Hb_048476_060 Hb_000062_090--Hb_004158_020 Hb_000671_130 Hb_000671_130 Hb_000062_090--Hb_000671_130 Hb_012362_030 Hb_012362_030 Hb_000062_090--Hb_012362_030 Hb_001369_630 Hb_001369_630 Hb_000935_040--Hb_001369_630 Hb_000935_040--Hb_000012_080 Hb_000152_440 Hb_000152_440 Hb_000935_040--Hb_000152_440 Hb_000139_300 Hb_000139_300 Hb_000935_040--Hb_000139_300 Hb_000086_210 Hb_000086_210 Hb_000935_040--Hb_000086_210 Hb_031527_110 Hb_031527_110 Hb_001904_050--Hb_031527_110 Hb_000742_020 Hb_000742_020 Hb_001904_050--Hb_000742_020 Hb_154038_020 Hb_154038_020 Hb_001904_050--Hb_154038_020 Hb_007441_080 Hb_007441_080 Hb_001904_050--Hb_007441_080 Hb_000181_350 Hb_000181_350 Hb_001904_050--Hb_000181_350 Hb_002110_100 Hb_002110_100 Hb_004158_020--Hb_002110_100 Hb_004158_020--Hb_000402_130 Hb_032920_070 Hb_032920_070 Hb_004158_020--Hb_032920_070 Hb_001754_080 Hb_001754_080 Hb_004158_020--Hb_001754_080 Hb_004007_110 Hb_004007_110 Hb_004158_020--Hb_004007_110 Hb_004158_020--Hb_000023_310 Hb_124677_030 Hb_124677_030 Hb_188281_030--Hb_124677_030 Hb_000345_460 Hb_000345_460 Hb_188281_030--Hb_000345_460 Hb_000331_350 Hb_000331_350 Hb_188281_030--Hb_000331_350 Hb_000282_050 Hb_000282_050 Hb_188281_030--Hb_000282_050 Hb_002027_440 Hb_002027_440 Hb_188281_030--Hb_002027_440 Hb_001221_030 Hb_001221_030 Hb_188281_030--Hb_001221_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79408 4.29785 19.3439 31.0175 2.12626 2.99765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85838 12.563 9.60662 7.60379 9.95628

CAGE analysis