Hb_001369_630

Information

Type -
Description -
Location Contig1369: 499922-501160
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14480g
description POPTRDRAFT_662454; hypothetical protein
nr
ID XP_012090411.1
description PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
swissprot
ID Q9LPC1
description UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1
trembl
ID A0A067JEY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26228 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-glucuronate 4-epimerase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10211: 499678-503323 , PASA_asmbl_10212: 499678-501475
cDNA
(Sanger)
(ID:Location)		 036_N15.ab1: 499678-500451

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_630 0.0 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
2 Hb_000935_040 0.0807664476 - - Uncharacterized protein isoform 2 [Theobroma cacao]
3 Hb_000696_070 0.1097125115 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
4 Hb_002007_320 0.1167229623 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
5 Hb_000808_150 0.1177929185 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
6 Hb_003371_070 0.1214976918 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
7 Hb_000049_160 0.1221966622 - - tyrosine decarboxylase family protein [Populus trichocarpa]
8 Hb_002781_050 0.127138795 - - cytochrome B5 isoform 1, putative [Ricinus communis]
9 Hb_048476_060 0.1308081714 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
10 Hb_034726_010 0.1318118059 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_000193_340 0.1350581411 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
12 Hb_147245_010 0.1352761956 - - casein kinase, putative [Ricinus communis]
13 Hb_003207_150 0.1397942479 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
14 Hb_000139_300 0.1411290914 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
15 Hb_000110_060 0.1417326962 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
16 Hb_000012_080 0.1420428763 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
17 Hb_003408_010 0.1420503622 - - fructokinase [Manihot esculenta]
18 Hb_006351_020 0.1431856274 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
19 Hb_006711_090 0.1442161209 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
20 Hb_005074_040 0.1450316081 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_630 Hb_001369_630 Hb_000935_040 Hb_000935_040 Hb_001369_630--Hb_000935_040 Hb_000696_070 Hb_000696_070 Hb_001369_630--Hb_000696_070 Hb_002007_320 Hb_002007_320 Hb_001369_630--Hb_002007_320 Hb_000808_150 Hb_000808_150 Hb_001369_630--Hb_000808_150 Hb_003371_070 Hb_003371_070 Hb_001369_630--Hb_003371_070 Hb_000049_160 Hb_000049_160 Hb_001369_630--Hb_000049_160 Hb_000935_040--Hb_002007_320 Hb_000012_080 Hb_000012_080 Hb_000935_040--Hb_000012_080 Hb_000152_440 Hb_000152_440 Hb_000935_040--Hb_000152_440 Hb_000139_300 Hb_000139_300 Hb_000935_040--Hb_000139_300 Hb_000086_210 Hb_000086_210 Hb_000935_040--Hb_000086_210 Hb_002781_050 Hb_002781_050 Hb_000696_070--Hb_002781_050 Hb_000806_130 Hb_000806_130 Hb_000696_070--Hb_000806_130 Hb_001119_070 Hb_001119_070 Hb_000696_070--Hb_001119_070 Hb_001486_350 Hb_001486_350 Hb_000696_070--Hb_001486_350 Hb_026527_010 Hb_026527_010 Hb_000696_070--Hb_026527_010 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_002007_320--Hb_000012_080 Hb_000023_310 Hb_000023_310 Hb_002007_320--Hb_000023_310 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000808_150--Hb_000139_300 Hb_000749_020 Hb_000749_020 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010 Hb_000057_130 Hb_000057_130 Hb_003371_070--Hb_000057_130 Hb_000110_060 Hb_000110_060 Hb_003371_070--Hb_000110_060 Hb_001619_060 Hb_001619_060 Hb_003371_070--Hb_001619_060 Hb_003371_070--Hb_000023_310 Hb_007537_030 Hb_007537_030 Hb_003371_070--Hb_007537_030 Hb_000049_160--Hb_001619_060 Hb_000049_180 Hb_000049_180 Hb_000049_160--Hb_000049_180 Hb_002955_020 Hb_002955_020 Hb_000049_160--Hb_002955_020 Hb_000096_190 Hb_000096_190 Hb_000049_160--Hb_000096_190 Hb_000665_180 Hb_000665_180 Hb_000049_160--Hb_000665_180 Hb_000008_340 Hb_000008_340 Hb_000049_160--Hb_000008_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28552 2.25246 10.0379 23.7592 0.635884 0.951672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.35846 3.90138 4.1784 4.99329 9.48936

CAGE analysis