Hb_000935_040

Information

Type -
Description -
Location Contig935: 34993-38115
Sequence    

Annotation

kegg
ID tcc:TCM_000855
description Uncharacterized protein isoform 1
nr
ID XP_007047620.1
description Uncharacterized protein isoform 2 [Theobroma cacao]
swissprot
ID Q9M2Y6
description Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=2 SV=1
trembl
ID A0A061DHV3
description Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_000855 PE=4 SV=1
Gene Ontology
ID GO:0008168
description Uncharacterized protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62975: 35119-38155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000935_040 0.0 - - Uncharacterized protein isoform 2 [Theobroma cacao]
2 Hb_001369_630 0.0807664476 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
3 Hb_002007_320 0.09323892 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
4 Hb_000012_080 0.0947266602 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
5 Hb_000152_440 0.1056135265 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
6 Hb_000139_300 0.106158043 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
7 Hb_000086_210 0.1102891176 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_005074_040 0.1165486993 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000049_160 0.1204166246 - - tyrosine decarboxylase family protein [Populus trichocarpa]
10 Hb_006711_090 0.1236965829 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
11 Hb_000395_110 0.1255189653 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
12 Hb_003371_070 0.1260155198 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
13 Hb_000375_300 0.1276015918 - - PREDICTED: cyanate hydratase [Jatropha curcas]
14 Hb_001619_060 0.1285839607 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
15 Hb_000808_150 0.1290423311 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
16 Hb_004223_140 0.1309643018 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
17 Hb_002193_060 0.1320017663 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
18 Hb_001847_050 0.134209032 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
19 Hb_006351_020 0.134649911 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
20 Hb_003929_180 0.1379195039 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]

Gene co-expression network

sample Hb_000935_040 Hb_000935_040 Hb_001369_630 Hb_001369_630 Hb_000935_040--Hb_001369_630 Hb_002007_320 Hb_002007_320 Hb_000935_040--Hb_002007_320 Hb_000012_080 Hb_000012_080 Hb_000935_040--Hb_000012_080 Hb_000152_440 Hb_000152_440 Hb_000935_040--Hb_000152_440 Hb_000139_300 Hb_000139_300 Hb_000935_040--Hb_000139_300 Hb_000086_210 Hb_000086_210 Hb_000935_040--Hb_000086_210 Hb_000696_070 Hb_000696_070 Hb_001369_630--Hb_000696_070 Hb_001369_630--Hb_002007_320 Hb_000808_150 Hb_000808_150 Hb_001369_630--Hb_000808_150 Hb_003371_070 Hb_003371_070 Hb_001369_630--Hb_003371_070 Hb_000049_160 Hb_000049_160 Hb_001369_630--Hb_000049_160 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_002007_320--Hb_000012_080 Hb_000023_310 Hb_000023_310 Hb_002007_320--Hb_000023_310 Hb_006829_060 Hb_006829_060 Hb_000012_080--Hb_006829_060 Hb_000057_110 Hb_000057_110 Hb_000012_080--Hb_000057_110 Hb_001188_100 Hb_001188_100 Hb_000012_080--Hb_001188_100 Hb_005074_040 Hb_005074_040 Hb_000012_080--Hb_005074_040 Hb_000665_180 Hb_000665_180 Hb_000012_080--Hb_000665_180 Hb_000395_110 Hb_000395_110 Hb_000012_080--Hb_000395_110 Hb_000152_440--Hb_000086_210 Hb_000152_440--Hb_000012_080 Hb_000152_440--Hb_000139_300 Hb_000152_440--Hb_005074_040 Hb_001579_300 Hb_001579_300 Hb_000152_440--Hb_001579_300 Hb_000139_300--Hb_000086_210 Hb_026549_070 Hb_026549_070 Hb_000139_300--Hb_026549_070 Hb_000139_300--Hb_005074_040 Hb_004306_110 Hb_004306_110 Hb_000139_300--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_000139_300--Hb_009079_050 Hb_000139_300--Hb_000808_150 Hb_000086_210--Hb_005074_040 Hb_000749_020 Hb_000749_020 Hb_000086_210--Hb_000749_020 Hb_005563_010 Hb_005563_010 Hb_000086_210--Hb_005563_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75973 5.44374 19.146 35.8998 1.81798 2.29272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01333 7.08316 8.78593 7.1221 17.1574

CAGE analysis