Hb_000023_310

Information

Type -
Description -
Location Contig23: 522714-525956
Sequence    

Annotation

kegg
ID rcu:RCOM_0920740
description transporter, putative
nr
ID XP_011036709.1
description PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
swissprot
ID Q5FV41
description Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana GN=At5g25050 PE=2 SV=1
trembl
ID B9RNU1
description Transporter, putative OS=Ricinus communis GN=RCOM_0920740 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable folate-biopterin transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23966: 522505-526409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_310 0.0 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
2 Hb_002615_030 0.0754788555 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
3 Hb_002007_320 0.1039062789 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
4 Hb_001817_100 0.1064512622 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
5 Hb_004158_020 0.1075483636 - - Rab1 [Hevea brasiliensis]
6 Hb_007590_090 0.108511426 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
7 Hb_003371_070 0.1088346792 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
8 Hb_004994_180 0.1092787594 - - malic enzyme, putative [Ricinus communis]
9 Hb_002193_060 0.1114871843 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
10 Hb_002110_100 0.1136476624 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
11 Hb_002217_100 0.1155026286 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
12 Hb_185830_060 0.1186129332 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
13 Hb_000110_060 0.1195330346 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
14 Hb_007441_080 0.1203838979 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
15 Hb_001619_060 0.1206965007 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
16 Hb_000638_130 0.1209958012 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
17 Hb_000375_300 0.1214654763 - - PREDICTED: cyanate hydratase [Jatropha curcas]
18 Hb_038574_010 0.125529401 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
19 Hb_000964_030 0.1269968575 - - ADP/ATP carrier 2 [Theobroma cacao]
20 Hb_002534_130 0.1272200641 - - membrane associated ring finger 1,8, putative [Ricinus communis]

Gene co-expression network

sample Hb_000023_310 Hb_000023_310 Hb_002615_030 Hb_002615_030 Hb_000023_310--Hb_002615_030 Hb_002007_320 Hb_002007_320 Hb_000023_310--Hb_002007_320 Hb_001817_100 Hb_001817_100 Hb_000023_310--Hb_001817_100 Hb_004158_020 Hb_004158_020 Hb_000023_310--Hb_004158_020 Hb_007590_090 Hb_007590_090 Hb_000023_310--Hb_007590_090 Hb_003371_070 Hb_003371_070 Hb_000023_310--Hb_003371_070 Hb_005016_010 Hb_005016_010 Hb_002615_030--Hb_005016_010 Hb_002615_030--Hb_007590_090 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_000110_060 Hb_000110_060 Hb_002615_030--Hb_000110_060 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_000935_040 Hb_000935_040 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_001817_100--Hb_007590_090 Hb_002217_100 Hb_002217_100 Hb_001817_100--Hb_002217_100 Hb_001817_100--Hb_002615_030 Hb_001817_100--Hb_002007_320 Hb_001998_200 Hb_001998_200 Hb_001817_100--Hb_001998_200 Hb_002110_100 Hb_002110_100 Hb_004158_020--Hb_002110_100 Hb_000402_130 Hb_000402_130 Hb_004158_020--Hb_000402_130 Hb_032920_070 Hb_032920_070 Hb_004158_020--Hb_032920_070 Hb_001754_080 Hb_001754_080 Hb_004158_020--Hb_001754_080 Hb_004007_110 Hb_004007_110 Hb_004158_020--Hb_004007_110 Hb_007590_090--Hb_004007_110 Hb_007590_090--Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_007590_090--Hb_000012_110 Hb_007590_090--Hb_002217_100 Hb_000057_130 Hb_000057_130 Hb_003371_070--Hb_000057_130 Hb_003371_070--Hb_000110_060 Hb_001619_060 Hb_001619_060 Hb_003371_070--Hb_001619_060 Hb_007537_030 Hb_007537_030 Hb_003371_070--Hb_007537_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.208 4.49906 6.7234 12.6972 0.640426 1.90734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5943 5.00198 5.36572 5.05704 6.63946

CAGE analysis