Hb_002217_100

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoamide dehydrogenase
Location Contig2217: 124715-127426
Sequence    

Annotation

kegg
ID rcu:RCOM_1002450
description dihydrolipoamide dehydrogenase, putative (EC:1.8.1.4)
nr
ID XP_002519286.1
description dihydrolipoamide dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9M5K3
description Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2
trembl
ID B9RZW7
description Dihydrolipoyl dehydrogenase OS=Ricinus communis GN=RCOM_1002450 PE=4 SV=1
Gene Ontology
ID GO:0004148
description dihydrolipoyl mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22895: 124889-127408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_100 0.0 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
2 Hb_001817_100 0.0873966543 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
3 Hb_002615_030 0.0996307308 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
4 Hb_001016_100 0.1026841092 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
5 Hb_007590_090 0.1043204796 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
6 Hb_002045_060 0.1081476042 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
7 Hb_000964_030 0.1101182978 - - ADP/ATP carrier 2 [Theobroma cacao]
8 Hb_000638_130 0.1103140156 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
9 Hb_015057_020 0.1130797019 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
10 Hb_000023_310 0.1155026286 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
11 Hb_002110_100 0.1170413919 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
12 Hb_004123_020 0.1198540425 - - amino acid binding protein, putative [Ricinus communis]
13 Hb_000012_110 0.1206708343 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
14 Hb_005276_040 0.1215337603 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
15 Hb_001147_050 0.1220279676 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
16 Hb_003376_180 0.1221061302 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
17 Hb_004007_110 0.1226360966 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
18 Hb_004158_020 0.1238468725 - - Rab1 [Hevea brasiliensis]
19 Hb_001277_050 0.1239097233 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
20 Hb_002693_030 0.123941383 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]

Gene co-expression network

sample Hb_002217_100 Hb_002217_100 Hb_001817_100 Hb_001817_100 Hb_002217_100--Hb_001817_100 Hb_002615_030 Hb_002615_030 Hb_002217_100--Hb_002615_030 Hb_001016_100 Hb_001016_100 Hb_002217_100--Hb_001016_100 Hb_007590_090 Hb_007590_090 Hb_002217_100--Hb_007590_090 Hb_002045_060 Hb_002045_060 Hb_002217_100--Hb_002045_060 Hb_000964_030 Hb_000964_030 Hb_002217_100--Hb_000964_030 Hb_001817_100--Hb_007590_090 Hb_001817_100--Hb_002615_030 Hb_000023_310 Hb_000023_310 Hb_001817_100--Hb_000023_310 Hb_002007_320 Hb_002007_320 Hb_001817_100--Hb_002007_320 Hb_001998_200 Hb_001998_200 Hb_001817_100--Hb_001998_200 Hb_002615_030--Hb_000023_310 Hb_005016_010 Hb_005016_010 Hb_002615_030--Hb_005016_010 Hb_002615_030--Hb_007590_090 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_000110_060 Hb_000110_060 Hb_002615_030--Hb_000110_060 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_001892_070 Hb_001892_070 Hb_001016_100--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_001016_100--Hb_000920_200 Hb_003360_040 Hb_003360_040 Hb_001016_100--Hb_003360_040 Hb_000140_090 Hb_000140_090 Hb_001016_100--Hb_000140_090 Hb_002968_040 Hb_002968_040 Hb_001016_100--Hb_002968_040 Hb_001016_100--Hb_000964_030 Hb_004007_110 Hb_004007_110 Hb_007590_090--Hb_004007_110 Hb_007590_090--Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_007590_090--Hb_000012_110 Hb_005276_040 Hb_005276_040 Hb_002045_060--Hb_005276_040 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_000428_060 Hb_000428_060 Hb_002045_060--Hb_000428_060 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030 Hb_005653_070 Hb_005653_070 Hb_000964_030--Hb_005653_070 Hb_038574_010 Hb_038574_010 Hb_000964_030--Hb_038574_010 Hb_002119_130 Hb_002119_130 Hb_000964_030--Hb_002119_130 Hb_000252_100 Hb_000252_100 Hb_000964_030--Hb_000252_100 Hb_007218_120 Hb_007218_120 Hb_000964_030--Hb_007218_120 Hb_053709_050 Hb_053709_050 Hb_000964_030--Hb_053709_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2071 25.7215 58.2104 70.6229 5.57804 6.81649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5092 53.0947 50.8136 48.5839 48.8989

CAGE analysis