Hb_000057_130

Information

Type -
Description -
Location Contig57: 202214-205574
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18240g
description POPTRDRAFT_548840; pyridoxin biosynthesis PDX1-like protein 2
nr
ID XP_012073347.1
description PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
swissprot
ID Q9ZNR6
description Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Arabidopsis thaliana GN=PDX12 PE=1 SV=1
trembl
ID A0A067KMB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06283 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable pyridoxal biosynthesis protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49299: 204628-204837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_130 0.0 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
2 Hb_000861_100 0.0795967883 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
3 Hb_003371_070 0.102267965 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
4 Hb_001754_050 0.1083030893 - - protein arginine n-methyltransferase, putative [Ricinus communis]
5 Hb_004129_010 0.1094747444 - - aspartate aminotransferase, putative [Ricinus communis]
6 Hb_000339_020 0.1128706069 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
7 Hb_000922_320 0.11654983 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
8 Hb_002349_030 0.1167981123 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007229_050 0.1296821143 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
10 Hb_002046_060 0.1311959666 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
11 Hb_002391_320 0.1312250477 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
12 Hb_132840_160 0.1322278881 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000157_140 0.1331339978 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_005305_120 0.1333591515 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
15 Hb_000928_120 0.1335973273 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
16 Hb_000392_250 0.1347540675 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
17 Hb_002016_140 0.1357942634 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
18 Hb_007537_030 0.1372591163 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
19 Hb_012762_040 0.1375114606 - - big map kinase/bmk, putative [Ricinus communis]
20 Hb_002486_080 0.1407555473 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000057_130 Hb_000057_130 Hb_000861_100 Hb_000861_100 Hb_000057_130--Hb_000861_100 Hb_003371_070 Hb_003371_070 Hb_000057_130--Hb_003371_070 Hb_001754_050 Hb_001754_050 Hb_000057_130--Hb_001754_050 Hb_004129_010 Hb_004129_010 Hb_000057_130--Hb_004129_010 Hb_000339_020 Hb_000339_020 Hb_000057_130--Hb_000339_020 Hb_000922_320 Hb_000922_320 Hb_000057_130--Hb_000922_320 Hb_007229_050 Hb_007229_050 Hb_000861_100--Hb_007229_050 Hb_000861_100--Hb_003371_070 Hb_007537_030 Hb_007537_030 Hb_000861_100--Hb_007537_030 Hb_005305_120 Hb_005305_120 Hb_000861_100--Hb_005305_120 Hb_000861_100--Hb_004129_010 Hb_002007_320 Hb_002007_320 Hb_003371_070--Hb_002007_320 Hb_000110_060 Hb_000110_060 Hb_003371_070--Hb_000110_060 Hb_001619_060 Hb_001619_060 Hb_003371_070--Hb_001619_060 Hb_000023_310 Hb_000023_310 Hb_003371_070--Hb_000023_310 Hb_003371_070--Hb_007537_030 Hb_143766_080 Hb_143766_080 Hb_001754_050--Hb_143766_080 Hb_001754_050--Hb_004129_010 Hb_000392_250 Hb_000392_250 Hb_001754_050--Hb_000392_250 Hb_004883_020 Hb_004883_020 Hb_001754_050--Hb_004883_020 Hb_004218_130 Hb_004218_130 Hb_001754_050--Hb_004218_130 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_004129_010--Hb_007229_050 Hb_000256_160 Hb_000256_160 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010 Hb_000339_020--Hb_000861_100 Hb_000339_020--Hb_003030_010 Hb_132840_160 Hb_132840_160 Hb_000339_020--Hb_132840_160 Hb_000339_020--Hb_003371_070 Hb_000339_020--Hb_001754_050 Hb_029253_010 Hb_029253_010 Hb_000922_320--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_000922_320--Hb_000000_480 Hb_002235_060 Hb_002235_060 Hb_000922_320--Hb_002235_060 Hb_002325_060 Hb_002325_060 Hb_000922_320--Hb_002325_060 Hb_000757_130 Hb_000757_130 Hb_000922_320--Hb_000757_130 Hb_012762_040 Hb_012762_040 Hb_000922_320--Hb_012762_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11591 1.1188 1.37652 1.89244 0.0650071 0.0925522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.553276 0.455104 0.336768 1.02439 1.29242

CAGE analysis