Hb_000922_320

Information

Type -
Description -
Location Contig922: 273001-277019
Sequence    

Annotation

kegg
ID pop:POPTR_0012s08370g
description POPTRDRAFT_891868; hypothetical protein
nr
ID KJB07054.1
description hypothetical protein B456_001G071400 [Gossypium raimondii]
swissprot
ID Q69VR7
description Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT1 PE=2 SV=1
trembl
ID A0A0D2PJP8
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G071400 PE=4 SV=1
Gene Ontology
ID GO:0005739
description triose phosphate phosphate non-green chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62503: 272901-277115 , PASA_asmbl_62504: 273727-274081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_320 0.0 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
2 Hb_029253_010 0.1045746195 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
3 Hb_000000_480 0.1120088548 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
4 Hb_002235_060 0.1132438178 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
5 Hb_002325_060 0.1152292714 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
6 Hb_000757_130 0.1155598447 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012762_040 0.1159753887 - - big map kinase/bmk, putative [Ricinus communis]
8 Hb_000057_130 0.11654983 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
9 Hb_005357_110 0.1168784661 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
10 Hb_091318_010 0.1172653975 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
11 Hb_002374_270 0.1284393019 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002281_010 0.1290264996 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
13 Hb_015778_040 0.1307036701 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
14 Hb_000197_180 0.1358478101 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
15 Hb_000928_120 0.1383587622 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
16 Hb_002349_030 0.1384951493 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004679_040 0.1385890638 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
18 Hb_000098_180 0.1415921965 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
19 Hb_010534_020 0.141680501 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
20 Hb_006925_050 0.1419259515 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000922_320 Hb_000922_320 Hb_029253_010 Hb_029253_010 Hb_000922_320--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_000922_320--Hb_000000_480 Hb_002235_060 Hb_002235_060 Hb_000922_320--Hb_002235_060 Hb_002325_060 Hb_002325_060 Hb_000922_320--Hb_002325_060 Hb_000757_130 Hb_000757_130 Hb_000922_320--Hb_000757_130 Hb_012762_040 Hb_012762_040 Hb_000922_320--Hb_012762_040 Hb_005357_110 Hb_005357_110 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270 Hb_004218_130 Hb_004218_130 Hb_000000_480--Hb_004218_130 Hb_000000_480--Hb_012762_040 Hb_000622_330 Hb_000622_330 Hb_000000_480--Hb_000622_330 Hb_000098_180 Hb_000098_180 Hb_000000_480--Hb_000098_180 Hb_000928_120 Hb_000928_120 Hb_000000_480--Hb_000928_120 Hb_000000_480--Hb_029253_010 Hb_147245_010 Hb_147245_010 Hb_002235_060--Hb_147245_010 Hb_002235_060--Hb_002374_270 Hb_002235_060--Hb_000000_480 Hb_002235_060--Hb_002325_060 Hb_002235_060--Hb_000928_120 Hb_002325_060--Hb_000622_330 Hb_003670_030 Hb_003670_030 Hb_002325_060--Hb_003670_030 Hb_004218_120 Hb_004218_120 Hb_002325_060--Hb_004218_120 Hb_005054_020 Hb_005054_020 Hb_002325_060--Hb_005054_020 Hb_002281_010 Hb_002281_010 Hb_002325_060--Hb_002281_010 Hb_000757_130--Hb_029253_010 Hb_000589_170 Hb_000589_170 Hb_000757_130--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_000757_130--Hb_001155_050 Hb_004679_040 Hb_004679_040 Hb_000757_130--Hb_004679_040 Hb_000757_130--Hb_002374_270 Hb_000979_140 Hb_000979_140 Hb_012762_040--Hb_000979_140 Hb_001865_100 Hb_001865_100 Hb_012762_040--Hb_001865_100 Hb_001729_020 Hb_001729_020 Hb_012762_040--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_012762_040--Hb_000197_180 Hb_012762_040--Hb_000098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26832 28.3298 45.8254 51.7747 2.6603 4.92644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.799 7.97218 5.87713 14.5358 26.9758

CAGE analysis