Hb_005054_020

Information

Type -
Description -
Location Contig5054: 12999-16856
Sequence    

Annotation

kegg
ID tcc:TCM_042615
description Nucleotide-sugar transporter family protein
nr
ID XP_012088054.1
description PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
swissprot
ID Q5XF09
description Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1
trembl
ID A0A067LC90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01338 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sugar phosphate phosphate translocator at3g11320

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46045: 13528-13955 , PASA_asmbl_46046: 12887-16535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_020 0.0 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
2 Hb_000028_430 0.107564694 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
3 Hb_000928_120 0.1157948189 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
4 Hb_002325_060 0.1174997059 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
5 Hb_003849_190 0.1266520365 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
6 Hb_000365_280 0.1328701823 - - calcium binding protein/cast, putative [Ricinus communis]
7 Hb_000056_080 0.1328873468 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
8 Hb_003670_030 0.1357908681 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
9 Hb_004116_070 0.1369128587 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
10 Hb_003001_130 0.1416242201 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002284_080 0.1437538504 - - protein with unknown function [Ricinus communis]
12 Hb_000077_160 0.1457014628 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
13 Hb_132840_160 0.1463181082 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002235_060 0.1527494346 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
15 Hb_000000_480 0.1567084817 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
16 Hb_000735_140 0.1582220284 - - 3-glucanase family protein [Populus trichocarpa]
17 Hb_001433_160 0.1586401345 - - phosphatase 2C family protein [Populus trichocarpa]
18 Hb_002450_030 0.158845132 - - ATPP2-A13, putative [Ricinus communis]
19 Hb_002000_090 0.1589684061 - - 60S ribosomal protein L3B [Hevea brasiliensis]
20 Hb_004522_030 0.1599174903 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005054_020 Hb_005054_020 Hb_000028_430 Hb_000028_430 Hb_005054_020--Hb_000028_430 Hb_000928_120 Hb_000928_120 Hb_005054_020--Hb_000928_120 Hb_002325_060 Hb_002325_060 Hb_005054_020--Hb_002325_060 Hb_003849_190 Hb_003849_190 Hb_005054_020--Hb_003849_190 Hb_000365_280 Hb_000365_280 Hb_005054_020--Hb_000365_280 Hb_000056_080 Hb_000056_080 Hb_005054_020--Hb_000056_080 Hb_001250_080 Hb_001250_080 Hb_000028_430--Hb_001250_080 Hb_000227_280 Hb_000227_280 Hb_000028_430--Hb_000227_280 Hb_000028_430--Hb_000928_120 Hb_003001_130 Hb_003001_130 Hb_000028_430--Hb_003001_130 Hb_000028_430--Hb_003849_190 Hb_004522_030 Hb_004522_030 Hb_000928_120--Hb_004522_030 Hb_000283_140 Hb_000283_140 Hb_000928_120--Hb_000283_140 Hb_000928_120--Hb_003001_130 Hb_000622_330 Hb_000622_330 Hb_000928_120--Hb_000622_330 Hb_000570_020 Hb_000570_020 Hb_000928_120--Hb_000570_020 Hb_007537_030 Hb_007537_030 Hb_000928_120--Hb_007537_030 Hb_002325_060--Hb_000622_330 Hb_000922_320 Hb_000922_320 Hb_002325_060--Hb_000922_320 Hb_003670_030 Hb_003670_030 Hb_002325_060--Hb_003670_030 Hb_004218_120 Hb_004218_120 Hb_002325_060--Hb_004218_120 Hb_002281_010 Hb_002281_010 Hb_002325_060--Hb_002281_010 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_023344_110 Hb_023344_110 Hb_003849_190--Hb_023344_110 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030 Hb_003849_190--Hb_000056_080 Hb_000479_060 Hb_000479_060 Hb_000365_280--Hb_000479_060 Hb_004007_070 Hb_004007_070 Hb_000365_280--Hb_004007_070 Hb_002893_030 Hb_002893_030 Hb_000365_280--Hb_002893_030 Hb_000109_190 Hb_000109_190 Hb_000365_280--Hb_000109_190 Hb_002026_050 Hb_002026_050 Hb_000365_280--Hb_002026_050 Hb_002849_070 Hb_002849_070 Hb_000056_080--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_000056_080--Hb_000200_170 Hb_000203_270 Hb_000203_270 Hb_000056_080--Hb_000203_270 Hb_000056_080--Hb_003670_030 Hb_000056_080--Hb_000735_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00258 20.3333 16.9884 37.9096 0.816483 1.17002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.89607 6.30611 3.68321 7.53657 11.0515

CAGE analysis