Hb_000109_190

Information

Type -
Description -
Location Contig109: 271606-272715
Sequence    

Annotation

kegg
ID rcu:RCOM_0993520
description ring finger protein, putative
nr
ID XP_012092069.1
description PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
swissprot
ID Q9FL07
description RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1
trembl
ID A0A067JP67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21795 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_190 0.0 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
2 Hb_005408_100 0.0932427676 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
3 Hb_003001_130 0.1146360388 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000479_060 0.1167228905 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
5 Hb_020805_120 0.1262840282 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
6 Hb_003929_230 0.1278715491 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
7 Hb_000365_280 0.1330814317 - - calcium binding protein/cast, putative [Ricinus communis]
8 Hb_000753_120 0.1352486313 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
9 Hb_002289_150 0.1386068283 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
10 Hb_000230_470 0.1407156623 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
11 Hb_005539_140 0.145086666 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
12 Hb_004007_070 0.1492072424 - - adenylsulfate kinase, putative [Ricinus communis]
13 Hb_000797_060 0.1508758308 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_002909_100 0.1516518099 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
15 Hb_000603_020 0.1519404023 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
16 Hb_000138_060 0.1531560273 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
17 Hb_002973_030 0.153952521 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
18 Hb_000349_200 0.1542462976 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
19 Hb_000028_430 0.1544338572 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
20 Hb_000300_230 0.1558952085 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000109_190 Hb_000109_190 Hb_005408_100 Hb_005408_100 Hb_000109_190--Hb_005408_100 Hb_003001_130 Hb_003001_130 Hb_000109_190--Hb_003001_130 Hb_000479_060 Hb_000479_060 Hb_000109_190--Hb_000479_060 Hb_020805_120 Hb_020805_120 Hb_000109_190--Hb_020805_120 Hb_003929_230 Hb_003929_230 Hb_000109_190--Hb_003929_230 Hb_000365_280 Hb_000365_280 Hb_000109_190--Hb_000365_280 Hb_000230_470 Hb_000230_470 Hb_005408_100--Hb_000230_470 Hb_002909_100 Hb_002909_100 Hb_005408_100--Hb_002909_100 Hb_000320_270 Hb_000320_270 Hb_005408_100--Hb_000320_270 Hb_002740_100 Hb_002740_100 Hb_005408_100--Hb_002740_100 Hb_000753_120 Hb_000753_120 Hb_005408_100--Hb_000753_120 Hb_000603_020 Hb_000603_020 Hb_003001_130--Hb_000603_020 Hb_000928_120 Hb_000928_120 Hb_003001_130--Hb_000928_120 Hb_000283_140 Hb_000283_140 Hb_003001_130--Hb_000283_140 Hb_004241_110 Hb_004241_110 Hb_003001_130--Hb_004241_110 Hb_000227_280 Hb_000227_280 Hb_003001_130--Hb_000227_280 Hb_000271_220 Hb_000271_220 Hb_003001_130--Hb_000271_220 Hb_000479_060--Hb_000365_280 Hb_001999_200 Hb_001999_200 Hb_000479_060--Hb_001999_200 Hb_005539_140 Hb_005539_140 Hb_000479_060--Hb_005539_140 Hb_002973_030 Hb_002973_030 Hb_000479_060--Hb_002973_030 Hb_081864_010 Hb_081864_010 Hb_000479_060--Hb_081864_010 Hb_031089_050 Hb_031089_050 Hb_020805_120--Hb_031089_050 Hb_000473_120 Hb_000473_120 Hb_020805_120--Hb_000473_120 Hb_003006_080 Hb_003006_080 Hb_020805_120--Hb_003006_080 Hb_000138_060 Hb_000138_060 Hb_020805_120--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_020805_120--Hb_002289_150 Hb_003929_230--Hb_003001_130 Hb_001318_100 Hb_001318_100 Hb_003929_230--Hb_001318_100 Hb_003929_230--Hb_005408_100 Hb_000349_200 Hb_000349_200 Hb_003929_230--Hb_000349_200 Hb_003929_230--Hb_000603_020 Hb_004007_070 Hb_004007_070 Hb_000365_280--Hb_004007_070 Hb_002893_030 Hb_002893_030 Hb_000365_280--Hb_002893_030 Hb_005054_020 Hb_005054_020 Hb_000365_280--Hb_005054_020 Hb_002026_050 Hb_002026_050 Hb_000365_280--Hb_002026_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.375055 3.40869 1.93944 6.21665 0.550217 0.159488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.35656 0.245402 0.389652 0.914236 2.81661

CAGE analysis