Hb_020805_120

Information

Type -
Description -
Location Contig20805: 78763-83296
Sequence    

Annotation

kegg
ID rcu:RCOM_1601690
description glutamate receptor 3 plant, putative
nr
ID XP_012073614.1
description PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
swissprot
ID Q9C8E7
description Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1
trembl
ID A0A067KKZ1
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_08058 PE=3 SV=1
Gene Ontology
ID GO:0005622
description glutamate receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21526: 78937-84102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_120 0.0 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
2 Hb_031089_050 0.1051881099 - - kinase, putative [Ricinus communis]
3 Hb_000473_120 0.1122347436 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
4 Hb_003006_080 0.122476448 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
5 Hb_000138_060 0.1248601402 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
6 Hb_000109_190 0.1262840282 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
7 Hb_002289_150 0.1321759968 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
8 Hb_001195_310 0.134157853 - - ATP binding protein, putative [Ricinus communis]
9 Hb_116702_010 0.1354958864 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
10 Hb_005408_100 0.1385199848 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
11 Hb_011828_010 0.1402445535 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
12 Hb_002909_100 0.1435701948 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
13 Hb_003216_130 0.1440331807 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
14 Hb_010381_020 0.14687224 - - Endosomal P24A protein precursor, putative [Ricinus communis]
15 Hb_001998_220 0.1509521187 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
16 Hb_000753_120 0.1514618898 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
17 Hb_003975_010 0.1515742509 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
18 Hb_004943_040 0.1519367251 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
19 Hb_001699_170 0.1529383183 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000570_020 0.1555904867 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_020805_120 Hb_020805_120 Hb_031089_050 Hb_031089_050 Hb_020805_120--Hb_031089_050 Hb_000473_120 Hb_000473_120 Hb_020805_120--Hb_000473_120 Hb_003006_080 Hb_003006_080 Hb_020805_120--Hb_003006_080 Hb_000138_060 Hb_000138_060 Hb_020805_120--Hb_000138_060 Hb_000109_190 Hb_000109_190 Hb_020805_120--Hb_000109_190 Hb_002289_150 Hb_002289_150 Hb_020805_120--Hb_002289_150 Hb_007897_030 Hb_007897_030 Hb_031089_050--Hb_007897_030 Hb_001699_170 Hb_001699_170 Hb_031089_050--Hb_001699_170 Hb_031089_050--Hb_000473_120 Hb_003581_130 Hb_003581_130 Hb_031089_050--Hb_003581_130 Hb_004943_040 Hb_004943_040 Hb_031089_050--Hb_004943_040 Hb_011828_010 Hb_011828_010 Hb_000473_120--Hb_011828_010 Hb_001998_220 Hb_001998_220 Hb_000473_120--Hb_001998_220 Hb_000473_120--Hb_003006_080 Hb_002311_130 Hb_002311_130 Hb_000473_120--Hb_002311_130 Hb_030312_030 Hb_030312_030 Hb_003006_080--Hb_030312_030 Hb_005116_140 Hb_005116_140 Hb_003006_080--Hb_005116_140 Hb_002805_090 Hb_002805_090 Hb_003006_080--Hb_002805_090 Hb_019654_110 Hb_019654_110 Hb_003006_080--Hb_019654_110 Hb_010381_020 Hb_010381_020 Hb_003006_080--Hb_010381_020 Hb_000138_060--Hb_002289_150 Hb_116702_010 Hb_116702_010 Hb_000138_060--Hb_116702_010 Hb_000138_060--Hb_011828_010 Hb_001347_050 Hb_001347_050 Hb_000138_060--Hb_001347_050 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_005192_010 Hb_005192_010 Hb_000138_060--Hb_005192_010 Hb_005408_100 Hb_005408_100 Hb_000109_190--Hb_005408_100 Hb_003001_130 Hb_003001_130 Hb_000109_190--Hb_003001_130 Hb_000479_060 Hb_000479_060 Hb_000109_190--Hb_000479_060 Hb_003929_230 Hb_003929_230 Hb_000109_190--Hb_003929_230 Hb_000365_280 Hb_000365_280 Hb_000109_190--Hb_000365_280 Hb_001754_060 Hb_001754_060 Hb_002289_150--Hb_001754_060 Hb_000300_230 Hb_000300_230 Hb_002289_150--Hb_000300_230 Hb_000797_060 Hb_000797_060 Hb_002289_150--Hb_000797_060 Hb_002289_150--Hb_011828_010 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33085 11.0138 5.47421 17.5994 3.88676 1.28402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44115 1.44079 1.74757 4.54479 12.8714

CAGE analysis