Hb_001347_050

Information

Type -
Description -
Location Contig1347: 28523-31435
Sequence    

Annotation

kegg
ID rcu:RCOM_1064620
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_002521471.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID P15792
description Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1
trembl
ID B9S652
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1064620 PE=4 SV=1
Gene Ontology
ID GO:0004674
description protein kinase pvpk-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09775: 28336-32247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001347_050 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_000679_100 0.0942474964 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
3 Hb_000193_300 0.1062136174 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
4 Hb_000258_040 0.1076478078 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
5 Hb_003209_130 0.1098132366 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
6 Hb_000138_060 0.1132843886 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
7 Hb_000085_260 0.1183080591 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
8 Hb_001754_020 0.1206541478 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
9 Hb_000134_120 0.1212195218 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
10 Hb_007919_110 0.1216601411 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
11 Hb_001691_040 0.1239830957 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
12 Hb_000671_030 0.1244082957 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
13 Hb_000203_270 0.1251485353 - - alpha-xylosidase, putative [Ricinus communis]
14 Hb_004987_020 0.1268138121 - - -
15 Hb_005977_100 0.1279915653 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
16 Hb_017948_030 0.1285747511 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
17 Hb_002217_320 0.1315254473 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
18 Hb_003975_010 0.1330099742 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
19 Hb_006120_050 0.134434595 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
20 Hb_011310_110 0.1350891097 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001347_050 Hb_001347_050 Hb_000679_100 Hb_000679_100 Hb_001347_050--Hb_000679_100 Hb_000193_300 Hb_000193_300 Hb_001347_050--Hb_000193_300 Hb_000258_040 Hb_000258_040 Hb_001347_050--Hb_000258_040 Hb_003209_130 Hb_003209_130 Hb_001347_050--Hb_003209_130 Hb_000138_060 Hb_000138_060 Hb_001347_050--Hb_000138_060 Hb_000085_260 Hb_000085_260 Hb_001347_050--Hb_000085_260 Hb_000679_100--Hb_000085_260 Hb_001097_040 Hb_001097_040 Hb_000679_100--Hb_001097_040 Hb_007286_020 Hb_007286_020 Hb_000679_100--Hb_007286_020 Hb_001051_070 Hb_001051_070 Hb_000679_100--Hb_001051_070 Hb_000023_300 Hb_000023_300 Hb_000679_100--Hb_000023_300 Hb_010042_030 Hb_010042_030 Hb_000679_100--Hb_010042_030 Hb_026740_020 Hb_026740_020 Hb_000193_300--Hb_026740_020 Hb_000413_020 Hb_000413_020 Hb_000193_300--Hb_000413_020 Hb_001946_180 Hb_001946_180 Hb_000193_300--Hb_001946_180 Hb_005977_100 Hb_005977_100 Hb_000193_300--Hb_005977_100 Hb_000193_300--Hb_000085_260 Hb_004055_050 Hb_004055_050 Hb_000258_040--Hb_004055_050 Hb_000258_040--Hb_000679_100 Hb_007919_110 Hb_007919_110 Hb_000258_040--Hb_007919_110 Hb_000258_040--Hb_000085_260 Hb_010672_020 Hb_010672_020 Hb_000258_040--Hb_010672_020 Hb_002486_050 Hb_002486_050 Hb_003209_130--Hb_002486_050 Hb_000256_230 Hb_000256_230 Hb_003209_130--Hb_000256_230 Hb_000665_170 Hb_000665_170 Hb_003209_130--Hb_000665_170 Hb_005535_080 Hb_005535_080 Hb_003209_130--Hb_005535_080 Hb_000622_110 Hb_000622_110 Hb_003209_130--Hb_000622_110 Hb_004126_040 Hb_004126_040 Hb_003209_130--Hb_004126_040 Hb_002289_150 Hb_002289_150 Hb_000138_060--Hb_002289_150 Hb_116702_010 Hb_116702_010 Hb_000138_060--Hb_116702_010 Hb_011828_010 Hb_011828_010 Hb_000138_060--Hb_011828_010 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_005192_010 Hb_005192_010 Hb_000138_060--Hb_005192_010 Hb_001159_030 Hb_001159_030 Hb_000085_260--Hb_001159_030 Hb_000085_260--Hb_010042_030 Hb_005062_110 Hb_005062_110 Hb_000085_260--Hb_005062_110 Hb_000098_050 Hb_000098_050 Hb_000085_260--Hb_000098_050 Hb_000503_020 Hb_000503_020 Hb_000085_260--Hb_000503_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.14498 12.8239 10.9166 26.0414 4.02414 4.78418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.72862 2.21934 5.61567 5.91897 8.58775

CAGE analysis