Hb_116702_010

Information

Type -
Description -
Location Contig116702: 3-596
Sequence    

Annotation

kegg
ID tcc:TCM_031949
description Leucine-rich repeat protein kinase family protein
nr
ID XP_007021860.1
description Leucine-rich repeat protein kinase family protein [Theobroma cacao]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A061F7P8
description Leucine-rich repeat protein kinase family protein OS=Theobroma cacao GN=TCM_031949 PE=3 SV=1
Gene Ontology
ID GO:0000166
description leucine-rich repeat protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116702_010 0.0 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
2 Hb_000000_310 0.1027703002 - - metalloendopeptidase, putative [Ricinus communis]
3 Hb_000138_060 0.1093029069 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
4 Hb_026549_070 0.1137854294 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
5 Hb_005192_010 0.1149482876 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
6 Hb_001969_140 0.116130252 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
7 Hb_011828_010 0.1215315421 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
8 Hb_003682_070 0.125270126 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
9 Hb_003746_010 0.1287476754 - - conserved hypothetical protein [Ricinus communis]
10 Hb_028639_030 0.1288492741 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
11 Hb_002217_320 0.1290478154 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
12 Hb_003847_040 0.1305882725 - - adenosine diphosphatase, putative [Ricinus communis]
13 Hb_001049_150 0.1308256547 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
14 Hb_001195_310 0.1314430466 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000638_060 0.131720555 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
16 Hb_002289_150 0.1347428289 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
17 Hb_000922_060 0.1347711072 - - kinesin light chain, putative [Ricinus communis]
18 Hb_003006_090 0.1349524273 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
19 Hb_020805_120 0.1354958864 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
20 Hb_000300_510 0.1361220813 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]

Gene co-expression network

sample Hb_116702_010 Hb_116702_010 Hb_000000_310 Hb_000000_310 Hb_116702_010--Hb_000000_310 Hb_000138_060 Hb_000138_060 Hb_116702_010--Hb_000138_060 Hb_026549_070 Hb_026549_070 Hb_116702_010--Hb_026549_070 Hb_005192_010 Hb_005192_010 Hb_116702_010--Hb_005192_010 Hb_001969_140 Hb_001969_140 Hb_116702_010--Hb_001969_140 Hb_011828_010 Hb_011828_010 Hb_116702_010--Hb_011828_010 Hb_003682_070 Hb_003682_070 Hb_000000_310--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000000_310--Hb_000107_250 Hb_000300_510 Hb_000300_510 Hb_000000_310--Hb_000300_510 Hb_000684_390 Hb_000684_390 Hb_000000_310--Hb_000684_390 Hb_000120_860 Hb_000120_860 Hb_000000_310--Hb_000120_860 Hb_000922_060 Hb_000922_060 Hb_000000_310--Hb_000922_060 Hb_002289_150 Hb_002289_150 Hb_000138_060--Hb_002289_150 Hb_000138_060--Hb_011828_010 Hb_001347_050 Hb_001347_050 Hb_000138_060--Hb_001347_050 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_000138_060--Hb_005192_010 Hb_000139_300 Hb_000139_300 Hb_026549_070--Hb_000139_300 Hb_004306_110 Hb_004306_110 Hb_026549_070--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_026549_070--Hb_009079_050 Hb_003847_040 Hb_003847_040 Hb_026549_070--Hb_003847_040 Hb_002164_020 Hb_002164_020 Hb_026549_070--Hb_002164_020 Hb_001195_660 Hb_001195_660 Hb_026549_070--Hb_001195_660 Hb_003975_010 Hb_003975_010 Hb_005192_010--Hb_003975_010 Hb_001029_040 Hb_001029_040 Hb_005192_010--Hb_001029_040 Hb_003746_010 Hb_003746_010 Hb_005192_010--Hb_003746_010 Hb_005192_010--Hb_000300_510 Hb_005192_010--Hb_000922_060 Hb_001754_020 Hb_001754_020 Hb_005192_010--Hb_001754_020 Hb_001195_310 Hb_001195_310 Hb_001969_140--Hb_001195_310 Hb_000167_040 Hb_000167_040 Hb_001969_140--Hb_000167_040 Hb_001216_110 Hb_001216_110 Hb_001969_140--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_001969_140--Hb_000679_040 Hb_011310_050 Hb_011310_050 Hb_001969_140--Hb_011310_050 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_011828_010--Hb_002289_150 Hb_011828_010--Hb_001969_140 Hb_000271_220 Hb_000271_220 Hb_011828_010--Hb_000271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47156 2.50486 2.43451 6.3746 1.15482 0.581953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.615003 0.563884 0.844064 1.12388 5.29173

CAGE analysis