Hb_000138_060

Information

Type -
Description -
Location Contig138: 151435-156204
Sequence    

Annotation

kegg
ID rcu:RCOM_0277570
description hypothetical protein
nr
ID XP_012087787.1
description PREDICTED: protein trichome birefringence [Jatropha curcas]
swissprot
ID Q9FG35
description Protein trichome birefringence OS=Arabidopsis thaliana GN=TBR PE=1 SV=1
trembl
ID B9T8G7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0277570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10483: 153105-156262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_060 0.0 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
2 Hb_002289_150 0.0669641431 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
3 Hb_116702_010 0.1093029069 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
4 Hb_011828_010 0.1117677689 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
5 Hb_001347_050 0.1132843886 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_002217_320 0.115184447 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
7 Hb_005192_010 0.1212492428 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
8 Hb_003975_010 0.1228456727 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
9 Hb_026740_020 0.1229873124 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
10 Hb_006469_070 0.1245140502 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
11 Hb_020805_120 0.1248601402 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
12 Hb_001754_020 0.1264214173 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
13 Hb_028639_030 0.1276843107 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
14 Hb_031089_050 0.128558424 - - kinase, putative [Ricinus communis]
15 Hb_001754_060 0.1289302889 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
16 Hb_000193_300 0.1300008419 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
17 Hb_020586_010 0.1319933929 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
18 Hb_000342_170 0.1322279222 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
19 Hb_028077_020 0.1326571134 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003894_010 0.135081729 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000138_060 Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_000138_060--Hb_002289_150 Hb_116702_010 Hb_116702_010 Hb_000138_060--Hb_116702_010 Hb_011828_010 Hb_011828_010 Hb_000138_060--Hb_011828_010 Hb_001347_050 Hb_001347_050 Hb_000138_060--Hb_001347_050 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_005192_010 Hb_005192_010 Hb_000138_060--Hb_005192_010 Hb_001754_060 Hb_001754_060 Hb_002289_150--Hb_001754_060 Hb_000300_230 Hb_000300_230 Hb_002289_150--Hb_000300_230 Hb_000797_060 Hb_000797_060 Hb_002289_150--Hb_000797_060 Hb_002289_150--Hb_011828_010 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020 Hb_000000_310 Hb_000000_310 Hb_116702_010--Hb_000000_310 Hb_026549_070 Hb_026549_070 Hb_116702_010--Hb_026549_070 Hb_116702_010--Hb_005192_010 Hb_001969_140 Hb_001969_140 Hb_116702_010--Hb_001969_140 Hb_116702_010--Hb_011828_010 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_011828_010--Hb_001969_140 Hb_000271_220 Hb_000271_220 Hb_011828_010--Hb_000271_220 Hb_000679_100 Hb_000679_100 Hb_001347_050--Hb_000679_100 Hb_000193_300 Hb_000193_300 Hb_001347_050--Hb_000193_300 Hb_000258_040 Hb_000258_040 Hb_001347_050--Hb_000258_040 Hb_003209_130 Hb_003209_130 Hb_001347_050--Hb_003209_130 Hb_000085_260 Hb_000085_260 Hb_001347_050--Hb_000085_260 Hb_012762_060 Hb_012762_060 Hb_002217_320--Hb_012762_060 Hb_000638_060 Hb_000638_060 Hb_002217_320--Hb_000638_060 Hb_001847_050 Hb_001847_050 Hb_002217_320--Hb_001847_050 Hb_003964_080 Hb_003964_080 Hb_002217_320--Hb_003964_080 Hb_003680_030 Hb_003680_030 Hb_002217_320--Hb_003680_030 Hb_006829_070 Hb_006829_070 Hb_002217_320--Hb_006829_070 Hb_003975_010 Hb_003975_010 Hb_005192_010--Hb_003975_010 Hb_001029_040 Hb_001029_040 Hb_005192_010--Hb_001029_040 Hb_003746_010 Hb_003746_010 Hb_005192_010--Hb_003746_010 Hb_000300_510 Hb_000300_510 Hb_005192_010--Hb_000300_510 Hb_000922_060 Hb_000922_060 Hb_005192_010--Hb_000922_060 Hb_001754_020 Hb_001754_020 Hb_005192_010--Hb_001754_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40286 22.2969 14.1782 49.1046 6.31082 5.64141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.72069 2.69462 6.09417 10.3138 24.3626

CAGE analysis