Hb_000300_230

Information

Type -
Description -
Location Contig300: 198295-200022
Sequence    

Annotation

kegg
ID rcu:RCOM_1321040
description Sodium/potassium/calcium exchanger 6 precursor, putative
nr
ID XP_012070371.1
description PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
swissprot
ID Q9FKP2
description Cation/calcium exchanger 2 OS=Arabidopsis thaliana GN=CCX2 PE=3 SV=1
trembl
ID A0A067KU17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02662 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation calcium exchanger 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31567: 197873-200124
cDNA
(Sanger)
(ID:Location)		 027_C14.ab1: 197976-198783 , 049_K23.ab1: 197980-198567 , 052_J22.ab1: 197976-198823

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_230 0.0 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
2 Hb_000797_060 0.1032957744 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
3 Hb_002289_150 0.10801239 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
4 Hb_001754_060 0.129169276 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
5 Hb_004449_090 0.1348098129 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
6 Hb_000138_060 0.1440287683 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
7 Hb_005489_150 0.144855476 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
8 Hb_000805_140 0.1528511564 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
9 Hb_002217_500 0.1536170383 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
10 Hb_005539_140 0.1547046299 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
11 Hb_000109_190 0.1558952085 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
12 Hb_000455_070 0.1564940342 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
13 Hb_104571_010 0.1582690233 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
14 Hb_028639_030 0.161940897 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
15 Hb_002173_030 0.1622732908 - - hypothetical protein JCGZ_12466 [Jatropha curcas]
16 Hb_002217_320 0.1643013739 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
17 Hb_003207_150 0.1648829645 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
18 Hb_066514_010 0.1662339932 - - hypothetical protein RCOM_0204720 [Ricinus communis]
19 Hb_010812_110 0.166718579 - - putative plant disease resistance family protein [Populus trichocarpa]
20 Hb_160405_010 0.1671015968 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_000300_230 Hb_000300_230 Hb_000797_060 Hb_000797_060 Hb_000300_230--Hb_000797_060 Hb_002289_150 Hb_002289_150 Hb_000300_230--Hb_002289_150 Hb_001754_060 Hb_001754_060 Hb_000300_230--Hb_001754_060 Hb_004449_090 Hb_004449_090 Hb_000300_230--Hb_004449_090 Hb_000138_060 Hb_000138_060 Hb_000300_230--Hb_000138_060 Hb_005489_150 Hb_005489_150 Hb_000300_230--Hb_005489_150 Hb_000797_060--Hb_002289_150 Hb_000797_060--Hb_001754_060 Hb_000109_190 Hb_000109_190 Hb_000797_060--Hb_000109_190 Hb_000797_060--Hb_000138_060 Hb_000797_060--Hb_005489_150 Hb_002289_150--Hb_000138_060 Hb_002289_150--Hb_001754_060 Hb_011828_010 Hb_011828_010 Hb_002289_150--Hb_011828_010 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020 Hb_017159_010 Hb_017159_010 Hb_001754_060--Hb_017159_010 Hb_003090_160 Hb_003090_160 Hb_001754_060--Hb_003090_160 Hb_000203_270 Hb_000203_270 Hb_001754_060--Hb_000203_270 Hb_000523_030 Hb_000523_030 Hb_001754_060--Hb_000523_030 Hb_160405_010 Hb_160405_010 Hb_004449_090--Hb_160405_010 Hb_030565_050 Hb_030565_050 Hb_004449_090--Hb_030565_050 Hb_000028_580 Hb_000028_580 Hb_004449_090--Hb_000028_580 Hb_004449_090--Hb_002289_150 Hb_004449_090--Hb_011828_010 Hb_116702_010 Hb_116702_010 Hb_000138_060--Hb_116702_010 Hb_000138_060--Hb_011828_010 Hb_001347_050 Hb_001347_050 Hb_000138_060--Hb_001347_050 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_005192_010 Hb_005192_010 Hb_000138_060--Hb_005192_010 Hb_005539_140 Hb_005539_140 Hb_005489_150--Hb_005539_140 Hb_011360_110 Hb_011360_110 Hb_005489_150--Hb_011360_110 Hb_005489_150--Hb_002289_150 Hb_028639_030 Hb_028639_030 Hb_005489_150--Hb_028639_030 Hb_000320_350 Hb_000320_350 Hb_005489_150--Hb_000320_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45443 19.6271 9.68219 58.6594 6.79651 4.39658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00332 3.70127 5.72514 8.51541 13.6795

CAGE analysis