Hb_160405_010

Information

Type -
Description -
Location Contig160405: 31-477
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G027200g
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14364: 215-330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160405_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_004449_090 0.1107960908 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
3 Hb_000032_430 0.1170952253 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005016_020 0.1223146106 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
5 Hb_000000_110 0.1381446383 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
6 Hb_001357_030 0.144179975 - - hypothetical protein F383_04880 [Gossypium arboreum]
7 Hb_001178_080 0.1463970229 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
8 Hb_017159_010 0.1476237231 - - -
9 Hb_002539_050 0.1545608074 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
10 Hb_000028_580 0.15773208 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
11 Hb_003647_040 0.1599699696 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000302_100 0.1640840259 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
13 Hb_000300_230 0.1671015968 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
14 Hb_001754_060 0.1671594772 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
15 Hb_012727_010 0.1676842194 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_014497_040 0.1687685177 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
17 Hb_106136_010 0.172103705 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_002173_030 0.1727532306 - - hypothetical protein JCGZ_12466 [Jatropha curcas]
19 Hb_066514_010 0.17511869 - - hypothetical protein RCOM_0204720 [Ricinus communis]
20 Hb_004409_030 0.1771711108 - - Glutamine synthetase 1,4 [Theobroma cacao]

Gene co-expression network

sample Hb_160405_010 Hb_160405_010 Hb_004449_090 Hb_004449_090 Hb_160405_010--Hb_004449_090 Hb_000032_430 Hb_000032_430 Hb_160405_010--Hb_000032_430 Hb_005016_020 Hb_005016_020 Hb_160405_010--Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_160405_010--Hb_000000_110 Hb_001357_030 Hb_001357_030 Hb_160405_010--Hb_001357_030 Hb_001178_080 Hb_001178_080 Hb_160405_010--Hb_001178_080 Hb_030565_050 Hb_030565_050 Hb_004449_090--Hb_030565_050 Hb_000028_580 Hb_000028_580 Hb_004449_090--Hb_000028_580 Hb_000300_230 Hb_000300_230 Hb_004449_090--Hb_000300_230 Hb_002289_150 Hb_002289_150 Hb_004449_090--Hb_002289_150 Hb_011828_010 Hb_011828_010 Hb_004449_090--Hb_011828_010 Hb_001178_090 Hb_001178_090 Hb_000032_430--Hb_001178_090 Hb_003647_040 Hb_003647_040 Hb_000032_430--Hb_003647_040 Hb_002749_040 Hb_002749_040 Hb_000032_430--Hb_002749_040 Hb_002539_050 Hb_002539_050 Hb_000032_430--Hb_002539_050 Hb_003050_100 Hb_003050_100 Hb_000032_430--Hb_003050_100 Hb_005016_020--Hb_000000_110 Hb_001898_020 Hb_001898_020 Hb_005016_020--Hb_001898_020 Hb_005016_020--Hb_001178_080 Hb_012727_010 Hb_012727_010 Hb_005016_020--Hb_012727_010 Hb_000220_080 Hb_000220_080 Hb_005016_020--Hb_000220_080 Hb_001832_210 Hb_001832_210 Hb_000000_110--Hb_001832_210 Hb_000000_110--Hb_000220_080 Hb_000000_110--Hb_001178_080 Hb_000000_120 Hb_000000_120 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030 Hb_000302_100 Hb_000302_100 Hb_001357_030--Hb_000302_100 Hb_000733_090 Hb_000733_090 Hb_001357_030--Hb_000733_090 Hb_001016_040 Hb_001016_040 Hb_001357_030--Hb_001016_040 Hb_105660_010 Hb_105660_010 Hb_001357_030--Hb_105660_010 Hb_049915_010 Hb_049915_010 Hb_001357_030--Hb_049915_010 Hb_001178_080--Hb_012727_010 Hb_001596_020 Hb_001596_020 Hb_001178_080--Hb_001596_020 Hb_006949_060 Hb_006949_060 Hb_001178_080--Hb_006949_060 Hb_017159_010 Hb_017159_010 Hb_001178_080--Hb_017159_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60205 16.5501 6.9775 38.5087 2.95275 4.30819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.974519 0.510306 0.632002 9.34364 6.2632

CAGE analysis