Hb_000733_090

Information

Type -
Description -
Location Contig733: 67865-69366
Sequence    

Annotation

kegg
ID rcu:RCOM_1483220
description lipid binding protein, putative
nr
ID XP_012088327.1
description PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SE37
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_1483220 PE=4 SV=1
Gene Ontology
ID GO:0008233
description lipid-transfer protein dir1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56150: 67352-67752 , PASA_asmbl_56151: 68719-69375
cDNA
(Sanger)
(ID:Location)		 026_G07.ab1: 68719-69375 , 028_C01.ab1: 68719-69375

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_090 0.0 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
2 Hb_049915_010 0.0934513085 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
3 Hb_103149_010 0.1163170693 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
4 Hb_003952_080 0.1331315796 - - zinc finger protein, putative [Ricinus communis]
5 Hb_000692_230 0.154367518 - - phospholipase d delta, putative [Ricinus communis]
6 Hb_000604_050 0.1575867502 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
7 Hb_008406_030 0.1629909563 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
8 Hb_001016_040 0.1642408785 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
9 Hb_001357_030 0.1655987805 - - hypothetical protein F383_04880 [Gossypium arboreum]
10 Hb_001195_650 0.1656162966 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
11 Hb_002783_210 0.1656713144 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
12 Hb_000567_220 0.1667151024 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
13 Hb_005396_030 0.1669745728 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003906_150 0.1699891946 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
15 Hb_000365_040 0.1704982467 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
16 Hb_000103_190 0.175041146 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
17 Hb_000983_110 0.1763392517 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
18 Hb_000705_070 0.1772337027 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000302_100 0.1792644615 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
20 Hb_000369_050 0.1828687965 - - Ankyrin repeat family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000733_090 Hb_000733_090 Hb_049915_010 Hb_049915_010 Hb_000733_090--Hb_049915_010 Hb_103149_010 Hb_103149_010 Hb_000733_090--Hb_103149_010 Hb_003952_080 Hb_003952_080 Hb_000733_090--Hb_003952_080 Hb_000692_230 Hb_000692_230 Hb_000733_090--Hb_000692_230 Hb_000604_050 Hb_000604_050 Hb_000733_090--Hb_000604_050 Hb_008406_030 Hb_008406_030 Hb_000733_090--Hb_008406_030 Hb_049915_010--Hb_008406_030 Hb_004297_080 Hb_004297_080 Hb_049915_010--Hb_004297_080 Hb_008643_020 Hb_008643_020 Hb_049915_010--Hb_008643_020 Hb_000172_230 Hb_000172_230 Hb_049915_010--Hb_000172_230 Hb_002783_210 Hb_002783_210 Hb_049915_010--Hb_002783_210 Hb_103149_010--Hb_000604_050 Hb_000702_040 Hb_000702_040 Hb_103149_010--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_103149_010--Hb_004586_230 Hb_001016_040 Hb_001016_040 Hb_103149_010--Hb_001016_040 Hb_003939_090 Hb_003939_090 Hb_103149_010--Hb_003939_090 Hb_005227_050 Hb_005227_050 Hb_003952_080--Hb_005227_050 Hb_000007_470 Hb_000007_470 Hb_003952_080--Hb_000007_470 Hb_003952_080--Hb_049915_010 Hb_108216_030 Hb_108216_030 Hb_003952_080--Hb_108216_030 Hb_023768_010 Hb_023768_010 Hb_003952_080--Hb_023768_010 Hb_004282_040 Hb_004282_040 Hb_000692_230--Hb_004282_040 Hb_000638_180 Hb_000638_180 Hb_000692_230--Hb_000638_180 Hb_009476_160 Hb_009476_160 Hb_000692_230--Hb_009476_160 Hb_002324_040 Hb_002324_040 Hb_000692_230--Hb_002324_040 Hb_000692_230--Hb_103149_010 Hb_002973_030 Hb_002973_030 Hb_000692_230--Hb_002973_030 Hb_003906_150 Hb_003906_150 Hb_000604_050--Hb_003906_150 Hb_000270_530 Hb_000270_530 Hb_000604_050--Hb_000270_530 Hb_003529_010 Hb_003529_010 Hb_000604_050--Hb_003529_010 Hb_004007_190 Hb_004007_190 Hb_000604_050--Hb_004007_190 Hb_008566_070 Hb_008566_070 Hb_000604_050--Hb_008566_070 Hb_004241_200 Hb_004241_200 Hb_008406_030--Hb_004241_200 Hb_009557_050 Hb_009557_050 Hb_008406_030--Hb_009557_050 Hb_001472_140 Hb_001472_140 Hb_008406_030--Hb_001472_140 Hb_001195_650 Hb_001195_650 Hb_008406_030--Hb_001195_650 Hb_008406_030--Hb_004297_080 Hb_027905_010 Hb_027905_010 Hb_008406_030--Hb_027905_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.732045 13.4265 2.93104 25.6919 1.00532 0.516071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.792471 0.433689 0.40601 2.00407 2.09028

CAGE analysis