Hb_027905_010

Information

Type -
Description -
Location Contig27905: 3696-4802
Sequence    

Annotation

kegg
ID rcu:RCOM_0852790
description transferase, transferring glycosyl groups, putative
nr
ID XP_002517421.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9LHD2
description Probable galacturonosyltransferase-like 10 OS=Arabidopsis thaliana GN=GATL10 PE=2 SV=1
trembl
ID B9RUH6
description Hexosyltransferase OS=Ricinus communis GN=RCOM_0852790 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase-like 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29119: 4742-4959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027905_010 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_000777_020 0.0989833838 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
3 Hb_003209_040 0.112068005 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
4 Hb_001195_650 0.1126742956 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
5 Hb_000827_090 0.1173509392 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
6 Hb_010142_040 0.1217348904 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
7 Hb_019026_030 0.1253123812 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
8 Hb_001213_140 0.1265471118 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
9 Hb_008406_030 0.1309330761 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
10 Hb_003209_120 0.1353652496 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
11 Hb_004241_200 0.142511914 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
12 Hb_012395_260 0.1440744081 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
13 Hb_004297_080 0.1546318055 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_009557_050 0.1597476408 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
15 Hb_000604_050 0.16056745 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
16 Hb_000567_220 0.1610238077 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
17 Hb_001257_120 0.1621421031 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
18 Hb_004143_050 0.162845803 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
19 Hb_000742_260 0.1654230354 - - hypothetical protein RCOM_1336320 [Ricinus communis]
20 Hb_001115_100 0.1660825556 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]

Gene co-expression network

sample Hb_027905_010 Hb_027905_010 Hb_000777_020 Hb_000777_020 Hb_027905_010--Hb_000777_020 Hb_003209_040 Hb_003209_040 Hb_027905_010--Hb_003209_040 Hb_001195_650 Hb_001195_650 Hb_027905_010--Hb_001195_650 Hb_000827_090 Hb_000827_090 Hb_027905_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_027905_010--Hb_010142_040 Hb_019026_030 Hb_019026_030 Hb_027905_010--Hb_019026_030 Hb_001213_140 Hb_001213_140 Hb_000777_020--Hb_001213_140 Hb_000777_020--Hb_000827_090 Hb_000777_020--Hb_010142_040 Hb_000777_020--Hb_001195_650 Hb_005389_090 Hb_005389_090 Hb_000777_020--Hb_005389_090 Hb_004241_200 Hb_004241_200 Hb_003209_040--Hb_004241_200 Hb_003209_040--Hb_001195_650 Hb_003209_040--Hb_019026_030 Hb_003209_120 Hb_003209_120 Hb_003209_040--Hb_003209_120 Hb_008406_030 Hb_008406_030 Hb_003209_040--Hb_008406_030 Hb_004586_230 Hb_004586_230 Hb_001195_650--Hb_004586_230 Hb_000983_110 Hb_000983_110 Hb_001195_650--Hb_000983_110 Hb_001195_650--Hb_004241_200 Hb_000827_090--Hb_010142_040 Hb_000827_090--Hb_001213_140 Hb_000221_280 Hb_000221_280 Hb_000827_090--Hb_000221_280 Hb_032920_040 Hb_032920_040 Hb_000827_090--Hb_032920_040 Hb_000731_020 Hb_000731_020 Hb_000827_090--Hb_000731_020 Hb_010142_040--Hb_032920_040 Hb_010142_040--Hb_001213_140 Hb_010142_040--Hb_000221_280 Hb_004143_050 Hb_004143_050 Hb_019026_030--Hb_004143_050 Hb_019026_030--Hb_001213_140 Hb_019026_030--Hb_000777_020 Hb_019026_030--Hb_000827_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.99513 108.456 33.3273 110.84 0.566482 1.40107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.23585 2.42693 3.84361 2.56844 7.82421

CAGE analysis