Hb_000777_020

Information

Type -
Description -
Location Contig777: 16826-18361
Sequence    

Annotation

kegg
ID cit:102609752
description 3-ketoacyl-CoA synthase 11-like
nr
ID XP_012078704.1
description PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
swissprot
ID O48780
description 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=2 SV=1
trembl
ID A0A067K8C1
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_13272 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57850: 15896-18508
cDNA
(Sanger)
(ID:Location)		 030_N19.ab1: 16043-17316

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000777_020 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
2 Hb_001213_140 0.0760589689 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
3 Hb_000827_090 0.0903319087 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
4 Hb_027905_010 0.0989833838 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_010142_040 0.1100288605 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
6 Hb_001195_650 0.1206389445 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
7 Hb_005389_090 0.1288255771 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
8 Hb_012395_260 0.1311073023 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
9 Hb_001257_120 0.1324502163 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
10 Hb_000221_280 0.1325885675 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
11 Hb_019026_030 0.1343476242 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
12 Hb_000661_010 0.1349067762 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
13 Hb_010369_010 0.1372768996 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000358_170 0.1379776476 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
15 Hb_003209_040 0.1380291972 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
16 Hb_003209_120 0.1389061591 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
17 Hb_000731_020 0.1408830835 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
18 Hb_098175_010 0.1433009367 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
19 Hb_006573_060 0.1477617461 - - hypothetical protein [Bruguiera gymnorhiza]
20 Hb_172240_010 0.1485116747 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]

Gene co-expression network

sample Hb_000777_020 Hb_000777_020 Hb_001213_140 Hb_001213_140 Hb_000777_020--Hb_001213_140 Hb_000827_090 Hb_000827_090 Hb_000777_020--Hb_000827_090 Hb_027905_010 Hb_027905_010 Hb_000777_020--Hb_027905_010 Hb_010142_040 Hb_010142_040 Hb_000777_020--Hb_010142_040 Hb_001195_650 Hb_001195_650 Hb_000777_020--Hb_001195_650 Hb_005389_090 Hb_005389_090 Hb_000777_020--Hb_005389_090 Hb_001213_140--Hb_000827_090 Hb_000221_280 Hb_000221_280 Hb_001213_140--Hb_000221_280 Hb_001213_140--Hb_010142_040 Hb_000731_020 Hb_000731_020 Hb_001213_140--Hb_000731_020 Hb_003071_040 Hb_003071_040 Hb_001213_140--Hb_003071_040 Hb_000827_090--Hb_010142_040 Hb_000827_090--Hb_000221_280 Hb_032920_040 Hb_032920_040 Hb_000827_090--Hb_032920_040 Hb_000827_090--Hb_000731_020 Hb_003209_040 Hb_003209_040 Hb_027905_010--Hb_003209_040 Hb_027905_010--Hb_001195_650 Hb_027905_010--Hb_000827_090 Hb_027905_010--Hb_010142_040 Hb_019026_030 Hb_019026_030 Hb_027905_010--Hb_019026_030 Hb_010142_040--Hb_032920_040 Hb_010142_040--Hb_000221_280 Hb_001195_650--Hb_003209_040 Hb_004586_230 Hb_004586_230 Hb_001195_650--Hb_004586_230 Hb_000983_110 Hb_000983_110 Hb_001195_650--Hb_000983_110 Hb_004241_200 Hb_004241_200 Hb_001195_650--Hb_004241_200 Hb_132517_010 Hb_132517_010 Hb_005389_090--Hb_132517_010 Hb_001897_030 Hb_001897_030 Hb_005389_090--Hb_001897_030 Hb_006573_060 Hb_006573_060 Hb_005389_090--Hb_006573_060 Hb_000991_110 Hb_000991_110 Hb_005389_090--Hb_000991_110 Hb_007313_050 Hb_007313_050 Hb_005389_090--Hb_007313_050 Hb_005396_110 Hb_005396_110 Hb_005389_090--Hb_005396_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.446419 144.477 40.907 119.419 1.29841 0.305387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12441 1.93658 2.15805 4.75103 5.00667

CAGE analysis