Hb_000221_280

Information

Type -
Description -
Location Contig221: 299696-308927
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17200g
description hypothetical protein
nr
ID XP_011003041.1
description PREDICTED: protein EXORDIUM-like [Populus euphratica]
swissprot
ID Q9ZPE7
description Protein EXORDIUM OS=Arabidopsis thaliana GN=EXO PE=2 SV=1
trembl
ID A0A0D3FAP4
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22812: 300165-300431
cDNA
(Sanger)
(ID:Location)		 006_F05.ab1: 308268-309040 , 008_N16.ab1: 308262-309047 , 041_K23.ab1: 304944-305503 , 050_F21.ab1: 308489-309047

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_280 0.0 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
2 Hb_000731_020 0.0623454219 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
3 Hb_000529_050 0.0815008039 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
4 Hb_000313_190 0.0819618073 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
5 Hb_001213_140 0.0969700287 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
6 Hb_029622_080 0.1011358506 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
7 Hb_003071_040 0.1026472451 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
8 Hb_000827_090 0.1039659872 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
9 Hb_032260_100 0.1049922052 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
10 Hb_001477_080 0.1141478757 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
11 Hb_007441_150 0.1231316802 - - Ankyrin repeat family protein [Theobroma cacao]
12 Hb_158926_010 0.1253821112 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_019654_010 0.1254776789 - - multicopper oxidase, putative [Ricinus communis]
14 Hb_019978_010 0.1262575959 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
15 Hb_000656_350 0.126460225 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
16 Hb_010142_040 0.1267354937 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
17 Hb_029238_020 0.1279727732 - - PREDICTED: expansin-like A1 [Jatropha curcas]
18 Hb_000925_110 0.1289450572 - - Spotted leaf protein, putative [Ricinus communis]
19 Hb_096930_010 0.1289835656 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
20 Hb_004242_160 0.1305780326 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000221_280 Hb_000221_280 Hb_000731_020 Hb_000731_020 Hb_000221_280--Hb_000731_020 Hb_000529_050 Hb_000529_050 Hb_000221_280--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_000221_280--Hb_000313_190 Hb_001213_140 Hb_001213_140 Hb_000221_280--Hb_001213_140 Hb_029622_080 Hb_029622_080 Hb_000221_280--Hb_029622_080 Hb_003071_040 Hb_003071_040 Hb_000221_280--Hb_003071_040 Hb_019978_010 Hb_019978_010 Hb_000731_020--Hb_019978_010 Hb_000731_020--Hb_000313_190 Hb_006916_220 Hb_006916_220 Hb_000731_020--Hb_006916_220 Hb_004724_310 Hb_004724_310 Hb_000731_020--Hb_004724_310 Hb_000731_020--Hb_003071_040 Hb_000529_050--Hb_000313_190 Hb_001477_080 Hb_001477_080 Hb_000529_050--Hb_001477_080 Hb_004586_120 Hb_004586_120 Hb_000529_050--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_000529_050--Hb_000322_020 Hb_032260_100 Hb_032260_100 Hb_000529_050--Hb_032260_100 Hb_000313_190--Hb_001477_080 Hb_000313_190--Hb_003071_040 Hb_004242_160 Hb_004242_160 Hb_000313_190--Hb_004242_160 Hb_000827_090 Hb_000827_090 Hb_001213_140--Hb_000827_090 Hb_000777_020 Hb_000777_020 Hb_001213_140--Hb_000777_020 Hb_010142_040 Hb_010142_040 Hb_001213_140--Hb_010142_040 Hb_001213_140--Hb_000731_020 Hb_001213_140--Hb_003071_040 Hb_029622_080--Hb_032260_100 Hb_000808_090 Hb_000808_090 Hb_029622_080--Hb_000808_090 Hb_000656_350 Hb_000656_350 Hb_029622_080--Hb_000656_350 Hb_000571_030 Hb_000571_030 Hb_029622_080--Hb_000571_030 Hb_001257_040 Hb_001257_040 Hb_029622_080--Hb_001257_040 Hb_001098_020 Hb_001098_020 Hb_003071_040--Hb_001098_020 Hb_098175_010 Hb_098175_010 Hb_003071_040--Hb_098175_010 Hb_010573_030 Hb_010573_030 Hb_003071_040--Hb_010573_030 Hb_003071_040--Hb_000529_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.438015 187.116 53.05 81.6117 2.03262 0.157371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.512161 0.917203 0.741807 2.8586 5.73076

CAGE analysis