Hb_000827_090

Information

Type -
Description -
Location Contig827: 139399-174060
Sequence    

Annotation

kegg
ID pda:103714121
description uncharacterized LOC103714121
nr
ID XP_008799495.1
description PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
swissprot
ID Q38910
description Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1
trembl
ID A0A0B0MGZ6
description Xyloglucan endotransglucosylase/hydrolase OS=Gossypium arboreum GN=F383_02229 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59739: 139388-140709 , PASA_asmbl_59740: 172652-173850
cDNA
(Sanger)
(ID:Location)		 034_O21.ab1: 172905-173850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000827_090 0.0 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
2 Hb_010142_040 0.0677178143 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
3 Hb_001213_140 0.0722825702 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
4 Hb_000777_020 0.0903319087 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
5 Hb_000221_280 0.1039659872 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
6 Hb_032920_040 0.1086123648 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
7 Hb_000731_020 0.1150160274 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
8 Hb_027905_010 0.1173509392 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_000358_170 0.1309472046 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
10 Hb_001257_120 0.1319784108 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
11 Hb_000313_190 0.1353679721 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
12 Hb_019026_030 0.1360525933 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
13 Hb_158926_010 0.1360731014 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_007441_150 0.13732976 - - Ankyrin repeat family protein [Theobroma cacao]
15 Hb_000529_050 0.1384789162 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
16 Hb_003071_040 0.1404136425 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
17 Hb_001894_060 0.1418653173 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
18 Hb_000988_020 0.1429001343 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
19 Hb_082225_010 0.1450276185 - - DWNN domain isoform 2 [Theobroma cacao]
20 Hb_031530_010 0.1484366621 - - DWNN domain isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000827_090 Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_000827_090--Hb_010142_040 Hb_001213_140 Hb_001213_140 Hb_000827_090--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_000827_090--Hb_000777_020 Hb_000221_280 Hb_000221_280 Hb_000827_090--Hb_000221_280 Hb_032920_040 Hb_032920_040 Hb_000827_090--Hb_032920_040 Hb_000731_020 Hb_000731_020 Hb_000827_090--Hb_000731_020 Hb_010142_040--Hb_032920_040 Hb_010142_040--Hb_001213_140 Hb_010142_040--Hb_000777_020 Hb_027905_010 Hb_027905_010 Hb_010142_040--Hb_027905_010 Hb_010142_040--Hb_000221_280 Hb_001213_140--Hb_000777_020 Hb_001213_140--Hb_000221_280 Hb_001213_140--Hb_000731_020 Hb_003071_040 Hb_003071_040 Hb_001213_140--Hb_003071_040 Hb_000777_020--Hb_027905_010 Hb_001195_650 Hb_001195_650 Hb_000777_020--Hb_001195_650 Hb_005389_090 Hb_005389_090 Hb_000777_020--Hb_005389_090 Hb_000221_280--Hb_000731_020 Hb_000529_050 Hb_000529_050 Hb_000221_280--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_000221_280--Hb_000313_190 Hb_029622_080 Hb_029622_080 Hb_000221_280--Hb_029622_080 Hb_000221_280--Hb_003071_040 Hb_000988_020 Hb_000988_020 Hb_032920_040--Hb_000988_020 Hb_082225_010 Hb_082225_010 Hb_032920_040--Hb_082225_010 Hb_000805_150 Hb_000805_150 Hb_032920_040--Hb_000805_150 Hb_002053_030 Hb_002053_030 Hb_032920_040--Hb_002053_030 Hb_019978_010 Hb_019978_010 Hb_000731_020--Hb_019978_010 Hb_000731_020--Hb_000313_190 Hb_006916_220 Hb_006916_220 Hb_000731_020--Hb_006916_220 Hb_004724_310 Hb_004724_310 Hb_000731_020--Hb_004724_310 Hb_000731_020--Hb_003071_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44745 98.8628 29.0406 62.5446 0.90166 0.245579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03513 1.61155 0.901689 0.908533 3.59553

CAGE analysis